Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30034
         (699 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11510.1 68416.m01403 40S ribosomal protein S14 (RPS14B) simi...   136   1e-32
At2g36160.1 68415.m04438 40S ribosomal protein S14 (RPS14A)           136   1e-32
At3g52580.1 68416.m05790 40S ribosomal protein S14 (RPS14C) ribo...   136   2e-32
At1g31817.1 68414.m03907 chloroplast 30S ribosomal protein S11, ...    34   0.10 
At2g44860.1 68415.m05585 60S ribosomal protein L24, putative           31   0.73 
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu...    30   1.7  
At4g25220.1 68417.m03629 transporter, putative similar to glycer...    28   5.2  
At3g53020.1 68416.m05844 60S ribosomal protein L24 (RPL24B) 60S ...    28   5.2  
At2g36620.1 68415.m04490 60S ribosomal protein L24 (RPL24A)            28   6.8  

>At3g11510.1 68416.m01403 40S ribosomal protein S14 (RPS14B) similar
           to 40S ribosomal protein S14 GB:P19950 [Zea mays]
          Length = 150

 Score =  136 bits (330), Expect = 1e-32
 Identities = 65/87 (74%), Positives = 74/87 (85%), Gaps = 1/87 (1%)
 Frame = -1

Query: 513 KNKVAKEEVQ-VTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVK 337
           K K  + +V+ VTLGP    GE VFGV HIFASFNDTF+HVTDLSGRET+ R+TGGMKVK
Sbjct: 3   KRKTKEPKVETVTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMKVK 62

Query: 336 ADRDEASPYAAMLAAQDVAEKCKTLGI 256
           ADRDE+SPYAAMLAAQDVA++CK LGI
Sbjct: 63  ADRDESSPYAAMLAAQDVAQRCKELGI 89



 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 24/49 (48%), Positives = 28/49 (57%)
 Frame = -3

Query: 253 ALHIKLRAXXXXXXXXXXXGAQXXXXXXXXXSMKIGRIEDVTPVPSDST 107
           A+H+KLRA           GAQ          MKIGRIEDVTP+P+DST
Sbjct: 91  AMHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDST 139


>At2g36160.1 68415.m04438 40S ribosomal protein S14 (RPS14A)
          Length = 150

 Score =  136 bits (330), Expect = 1e-32
 Identities = 66/86 (76%), Positives = 73/86 (84%)
 Frame = -1

Query: 513 KNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKA 334
           K K  K +V VTLGP    GE VFGV HIFASFNDTF+HVTDLSGRET+ R+TGGMKVKA
Sbjct: 5   KTKEPKVDV-VTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMKVKA 63

Query: 333 DRDEASPYAAMLAAQDVAEKCKTLGI 256
           DRDE+SPYAAMLAAQDVA++CK LGI
Sbjct: 64  DRDESSPYAAMLAAQDVAQRCKELGI 89



 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 24/49 (48%), Positives = 28/49 (57%)
 Frame = -3

Query: 253 ALHIKLRAXXXXXXXXXXXGAQXXXXXXXXXSMKIGRIEDVTPVPSDST 107
           A+H+KLRA           GAQ          MKIGRIEDVTP+P+DST
Sbjct: 91  AMHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDST 139


>At3g52580.1 68416.m05790 40S ribosomal protein S14 (RPS14C)
           ribosomal protein S14 -Zea mays,PIR2:A30097
          Length = 150

 Score =  136 bits (328), Expect = 2e-32
 Identities = 64/87 (73%), Positives = 74/87 (85%), Gaps = 1/87 (1%)
 Frame = -1

Query: 513 KNKVAKEEVQ-VTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVK 337
           K K  + +V+ VTLGP    GE VFGV H+FASFNDTF+HVTDLSGRET+ R+TGGMKVK
Sbjct: 3   KRKTKEPKVENVTLGPAVREGEQVFGVVHVFASFNDTFIHVTDLSGRETLVRITGGMKVK 62

Query: 336 ADRDEASPYAAMLAAQDVAEKCKTLGI 256
           ADRDE+SPYAAMLAAQDVA++CK LGI
Sbjct: 63  ADRDESSPYAAMLAAQDVAQRCKELGI 89



 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 24/49 (48%), Positives = 28/49 (57%)
 Frame = -3

Query: 253 ALHIKLRAXXXXXXXXXXXGAQXXXXXXXXXSMKIGRIEDVTPVPSDST 107
           A+H+KLRA           GAQ          MKIGRIEDVTP+P+DST
Sbjct: 91  AIHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDST 139


>At1g31817.1 68414.m03907 chloroplast 30S ribosomal protein S11,
           putative contains Pfam profile: PF00411: Ribosomal
           protein S11
          Length = 314

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = -1

Query: 453 ETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEK 274
           ET   + HI    N+TFV VTD  G       +G +       + + Y A   A+++  +
Sbjct: 190 ETNADIIHIKMLRNNTFVTVTDSKGNVKCKATSGSLPDLKGGRKMTNYTADATAENIGRR 249

Query: 273 CKTLGIR 253
            K +G++
Sbjct: 250 AKAMGLK 256


>At2g44860.1 68415.m05585 60S ribosomal protein L24, putative
          Length = 159

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 551 KCEAAHLMRRNPRKVTWTVLYR 616
           KC     M+RNPRKV WT  +R
Sbjct: 35  KCHKNFKMKRNPRKVKWTKAFR 56


>At4g35785.2 68417.m05083 transformer serine/arginine-rich
           ribonucleoprotein, putative similar to transformer-SR
           ribonucleoprotein [Nicotiana tabacum]
           gi|1781299|emb|CAA70700
          Length = 141

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 31/83 (37%), Positives = 39/83 (46%)
 Frame = +2

Query: 185 RLSTRTRGLCFVSTSSTELYVQGLMPRVLHFSATSCAANIAA*GDASSRSAFTFMPPVTR 364
           R  +R+RG   V    T LYV GL  RV   +     A+ A  G  +  S F  M P TR
Sbjct: 56  RSRSRSRGRSEVENPGTTLYVTGLSTRV---TDKDLEAHFAKEGKVA--SCFLVMEPRTR 110

Query: 365 AIVSRPDKSVT*TNVSLNEAKMC 433
             VSR    VT +  SL +A+ C
Sbjct: 111 --VSRGFAFVTMS--SLKDAERC 129


>At4g25220.1 68417.m03629 transporter, putative similar to
           glycerol-3-phosphate transporter (glycerol 3-phosphate
           permease) [Homo sapiens] GI:7543982
          Length = 504

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 72  YSLRPLRPPFLRVESDGTGVTSSMR 146
           Y   P+ PP +  E DGT + S+MR
Sbjct: 225 YLFLPVNPPTVEAERDGTEIDSTMR 249


>At3g53020.1 68416.m05844 60S ribosomal protein L24 (RPL24B) 60S
           ribosomal protein L24, Arabidopsis thaliana,
           EMBL:AC006282
          Length = 163

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 551 KCEAAHLMRRNPRKVTWTVLYRRKFKK 631
           KC+     +  P K+ WT +YR++ KK
Sbjct: 37  KCKRYFHNKLKPSKLAWTAMYRKQHKK 63


>At2g36620.1 68415.m04490 60S ribosomal protein L24 (RPL24A)
          Length = 164

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 551 KCEAAHLMRRNPRKVTWTVLYRRKFKK 631
           KC+     +  P K+ WT +YR++ KK
Sbjct: 37  KCKRYFHNKLKPSKLCWTAMYRKQHKK 63


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,976,974
Number of Sequences: 28952
Number of extensions: 314119
Number of successful extensions: 739
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)