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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30031
         (383 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14320.1 68417.m02206 60S ribosomal protein L36a/L44 (RPL36aB)      83   8e-17
At3g23390.1 68416.m02949 60S ribosomal protein L36a/L44 (RPL36aA...    83   8e-17
At2g32390.1 68415.m03958 glutamate receptor family protein (GLR3...    30   0.61 
At4g11680.1 68417.m01866 zinc finger (C3HC4-type RING finger) fa...    27   5.7  
At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3) ...    27   5.7  
At1g33400.1 68414.m04135 tetratricopeptide repeat (TPR)-containi...    27   5.7  
At5g60690.1 68418.m07616 homeodomain-leucine zipper protein Revo...    26   7.5  
At5g18530.1 68418.m02191 beige/BEACH domain-containing protein c...    26   7.5  
At3g17020.1 68416.m02173 universal stress protein (USP) family p...    26   7.5  
At2g13620.1 68415.m01501 cation/hydrogen exchanger, putative (CH...    26   7.5  
At1g05200.1 68414.m00524 glutamate receptor family protein (GLR3...    26   7.5  
At4g35270.1 68417.m05012 RWP-RK domain-containing protein simila...    26   9.9  
At1g59790.1 68414.m06732 cullin-related low similarity to Hs-CUL...    26   9.9  
At1g08150.1 68414.m00898 sodium/hydrogen exchanger family protei...    26   9.9  

>At4g14320.1 68417.m02206 60S ribosomal protein L36a/L44 (RPL36aB)
          Length = 105

 Score = 82.6 bits (195), Expect = 8e-17
 Identities = 40/78 (51%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
 Frame = +2

Query: 23  MVNVPKQRRTYXXXXXXXXXXXX--TQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXX 196
           MVN+PK + TY              TQYKK K+  AAQG+RRYDRKQ GYGGQ+KP+F  
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 197 XXXXXXXIVLRLECADCK 250
                  IVLRL+C  CK
Sbjct: 61  KAKTTKKIVLRLQCQSCK 78



 Score = 39.9 bits (89), Expect = 6e-04
 Identities = 16/21 (76%), Positives = 18/21 (85%)
 Frame = +1

Query: 256 SQVALKRCKHFELGGDKKRKG 318
           SQ  +KRCKHFE+GGDKK KG
Sbjct: 81  SQRPIKRCKHFEIGGDKKGKG 101


>At3g23390.1 68416.m02949 60S ribosomal protein L36a/L44 (RPL36aA)
           similar to ribosomal protein L41 GB:AAA34366 from
           [Candida maltosa]
          Length = 105

 Score = 82.6 bits (195), Expect = 8e-17
 Identities = 40/78 (51%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
 Frame = +2

Query: 23  MVNVPKQRRTYXXXXXXXXXXXX--TQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXX 196
           MVN+PK + TY              TQYKK K+  AAQG+RRYDRKQ GYGGQ+KP+F  
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 197 XXXXXXXIVLRLECADCK 250
                  IVLRL+C  CK
Sbjct: 61  KAKTTKKIVLRLQCQSCK 78



 Score = 39.9 bits (89), Expect = 6e-04
 Identities = 16/21 (76%), Positives = 18/21 (85%)
 Frame = +1

Query: 256 SQVALKRCKHFELGGDKKRKG 318
           SQ  +KRCKHFE+GGDKK KG
Sbjct: 81  SQRPIKRCKHFEIGGDKKGKG 101


>At2g32390.1 68415.m03958 glutamate receptor family protein (GLR3.5)
           plant glutamate receptor family, PMID:11379626
          Length = 895

 Score = 29.9 bits (64), Expect = 0.61
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -2

Query: 115 FLGLFVLCYLVYFVAFTFFAVRPALFW 35
           F GLF++C +V+F+A T F  +  +FW
Sbjct: 793 FWGLFLICGVVWFIALTLFCWK--VFW 817


>At4g11680.1 68417.m01866 zinc finger (C3HC4-type RING finger)
           family protein low similarity to SP|Q9WTV7 RING finger
           protein 12 (LIM domain interacting RING finger protein)
           {Mus musculus}; contains Pfam profile PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 390

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -1

Query: 164 NPAVYDHNVFYPGQRAFPWTFCTVLPCVLCGIYIFCSTSCAVLV 33
           +P +Y   + + G   F   FC  L CV+ G+ + C   C + +
Sbjct: 236 SPQLYWLCIIFLGFDVFFVVFCVALACVI-GLAVCCCLPCIIAI 278


>At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3)
           family protein low similarity to Translation initiation
           factor IF-3 from [subsp. Schizaphis graminum] {Buchnera
           aphidicola} SP|P46243, {Salmonella typhimurium}
           SP|P33321; contains Pfam profiles PF05198: Translation
           initiation factor IF-3 N-terminal domain, PF00707:
           Translation initiation factor IF-3 C-terminal domain
          Length = 520

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 108 PRKGTLPRVEDVMIVNSRVTVVSPNPSSKR 197
           P+KG +  ++D+ I ++RV   SP P S +
Sbjct: 255 PKKGGVKLMKDIDIKSARVKEESPKPDSSK 284


>At1g33400.1 68414.m04135 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515 TPR Domain
          Length = 798

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 92  LPCVLCGIYIFCSTSCAV 39
           +PC  C I ++CS SC +
Sbjct: 275 VPCPSCSIPVYCSESCQI 292


>At5g60690.1 68418.m07616 homeodomain-leucine zipper protein
           Revoluta (REV) / fascicular fiberless 1 (IFL1) identical
           to HD-zip transcription factor Revoluta (GI:9759333)
           {Arabidopsis thaliana}; contains Pfam profiles PF01852:
           START domain and PF00046: Homeobox domain
          Length = 842

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +3

Query: 159 RVTVVSPNPSSKRRQKPLRKLCSVLS 236
           RV    P PSS RRQ+ +R+ CS+L+
Sbjct: 39  RVYAECPKPSSLRRQQLIRE-CSILA 63


>At5g18530.1 68418.m02191 beige/BEACH domain-containing protein
           contains 5 WD-40 repeats (PF00400); contains
           Beige/BEACH domain (Pfam PF02138);  FACTOR ASSOCIATED
           WITH N-SMASE ACTIVATION (FAN) (SP:Q92636) Homo
           sapiens;similar to Lipopolysaccharide-responsive and
           beige-like anchor protein (CDC4-like protein)
           (Beige-like protein) (SP:P50851) [Homo sapiens}
          Length = 909

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = -1

Query: 158 AVYDHNVFYPG--QRAFPWTFCTVLPCVLCGIYIFCS--TSCAVLVRSPFLSS 12
           +VY+ N  YP   QR + WT    +P   C   IFCS   S + L   P+ SS
Sbjct: 459 SVYEPNE-YPSDMQRLYDWTPDECIPEFYCDPRIFCSLHPSMSDLAVPPWASS 510


>At3g17020.1 68416.m02173 universal stress protein (USP) family
           protein similar to early nodulin ENOD18 [Vicia faba]
           GI:11602747; contains Pfam profile PF00582: universal
           stress protein family
          Length = 163

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -2

Query: 334 KIGSSVPFSSCHHQAQSACISS-MQPVIHLAISTLKTEHNFLSGFCLLFE 188
           +IG +V FS C  +A S  I + ++   HL + T+  + N+  G   L+E
Sbjct: 8   RIGVAVDFSDCSKKALSWAIDNVVRDGDHLILITIAHDMNYEEGEMQLWE 57


>At2g13620.1 68415.m01501 cation/hydrogen exchanger, putative
           (CHX15) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 821

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 115 FLGLFVLCYLVYFVAFTFFAVRPALFWYV 29
           F  L+V+     F+A   F VRP + W +
Sbjct: 228 FASLWVMISSAVFIAVCVFVVRPGIAWII 256


>At1g05200.1 68414.m00524 glutamate receptor family protein (GLR3.4)
           plant glutamate receptor family, PMID:11379626
          Length = 959

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 115 FLGLFVLCYLVYFVAFTFFAVRPALFW 35
           F GLF++C +  F+A T F  R  +FW
Sbjct: 858 FWGLFLICGITCFMALTVFFWR--VFW 882


>At4g35270.1 68417.m05012 RWP-RK domain-containing protein similar
           to nodule inception protein GI:6448579 from (Lotus
           japonicus); contains Pfam profile: PF02042 RWP-RK domain
          Length = 974

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = -1

Query: 302 SPPSSKCLHLFNAT--CDSPCNQHTQDG 225
           SPPSS C H   ++  C +  NQ T  G
Sbjct: 774 SPPSSSCSHSSGSSTCCSTGANQSTNTG 801


>At1g59790.1 68414.m06732 cullin-related low similarity to Hs-CUL-1
           [Homo sapiens] GI:1381142
          Length = 374

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 72  HLHFLQYVLRCFGTFTIFEFVR 7
           H  F+ YV+ CF   T+F  VR
Sbjct: 338 HNKFIVYVIECFQNHTLFHKVR 359


>At1g08150.1 68414.m00898 sodium/hydrogen exchanger family protein
           contains InterPro entry IPR006153: Sodium/hydrogen
           exchanger
          Length = 815

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 88  LVYFVAFTFFAVRPALFWYV 29
           ++ +V F  + VRPA+FW +
Sbjct: 266 IIGYVIFMVWVVRPAMFWVI 285


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,111,285
Number of Sequences: 28952
Number of extensions: 155315
Number of successful extensions: 462
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 537681456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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