Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30025X
         (414 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63130.1 68418.m07926 octicosapeptide/Phox/Bem1p (PB1) domain...    30   0.71 
At1g30290.1 68414.m03704 pentatricopeptide (PPR) repeat-containi...    27   6.6  
At5g12000.1 68418.m01403 protein kinase family protein contains ...    26   8.7  

>At5g63130.1 68418.m07926 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein   contains Pfam profile
           PF00564: PB1 domain
          Length = 192

 Score = 29.9 bits (64), Expect = 0.71
 Identities = 18/65 (27%), Positives = 27/65 (41%)
 Frame = -1

Query: 339 HYAVITNSFKASVQETIMKLYRFCAMST*QQLSSPRSYFRTMMLDKKPKNLYTSCFV*DQ 160
           H  V++     S  E + KLY FC  S   +   P     T++  K  + L       D+
Sbjct: 40  HTRVLSVDRSISFSELMKKLYEFCGYSVDLRCQLPNGDLETLISVKSEEELAEIVEEYDR 99

Query: 159 LCKAK 145
           +C AK
Sbjct: 100 ICGAK 104


>At1g30290.1 68414.m03704 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 802

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -2

Query: 332 RLLQILLKHQYKKQS*SYTVFV--LCPPNNSLAVREVTSV 219
           +LLQ++  H +K  + SYT  +  +C    SL  RE+ ++
Sbjct: 471 KLLQVMHTHGHKPNTVSYTALLNGMCRTGKSLEAREMMNM 510


>At5g12000.1 68418.m01403 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 703

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +3

Query: 12  AHVIILWILDPFYTLTVSSK*LLLHNVIK 98
           +H  + W +D  + + ++SK +LLH  +K
Sbjct: 27  SHFAVRWAVDHLFNMIINSKMILLHVRLK 55


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,795,257
Number of Sequences: 28952
Number of extensions: 129099
Number of successful extensions: 212
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 625471056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)