SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30021
         (374 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34555.1 68417.m04910 40S ribosomal protein S25, putative           70   4e-13
At4g39200.1 68417.m05550 40S ribosomal protein S25 (RPS25E) ribo...    69   1e-12
At2g21580.1 68415.m02567 40S ribosomal protein S25 (RPS25B)            69   1e-12
At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A)            67   3e-12
At5g64950.1 68418.m08170 mitochondrial transcription termination...    29   0.76 
At1g14500.1 68414.m01719 ankyrin repeat family protein contains ...    29   1.3  
At2g17250.1 68415.m01992 expressed protein weak similarity to Ri...    28   2.3  
At3g60980.1 68416.m06824 pentatricopeptide (PPR) repeat-containi...    27   4.1  
At2g23170.1 68415.m02768 auxin-responsive GH3 family protein sim...    27   5.4  
At1g24706.1 68414.m03104 expressed protein                             27   5.4  
At5g54770.1 68418.m06822 thiazole biosynthetic enzyme, chloropla...    26   7.1  
At1g48180.1 68414.m05378 expressed protein ; expression supporte...    26   7.1  
At5g44000.1 68418.m05384 glutathione S-transferase C-terminal do...    26   9.4  
At5g38830.1 68418.m04697 tRNA synthetase class I (C) family prot...    26   9.4  
At5g27640.1 68418.m03311 eukaryotic translation initiation facto...    26   9.4  
At4g36670.1 68417.m05203 mannitol transporter, putative similar ...    26   9.4  
At2g02810.1 68415.m00226 UDP-galactose/UDP-glucose transporter c...    26   9.4  

>At4g34555.1 68417.m04910 40S ribosomal protein S25, putative
          Length = 108

 Score = 70.1 bits (164), Expect = 4e-13
 Identities = 30/51 (58%), Positives = 42/51 (82%)
 Frame = +1

Query: 109 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELRKK 261
           +NN VLFD+ TY+KL  E P++KLITP+++S+RL++ GSLARRA+ EL  K
Sbjct: 37  VNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRELMAK 87



 Score = 29.1 bits (62), Expect = 1.0
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +3

Query: 258 KGLIKQVVQHHGQVIYTRATKG 323
           KG I+ V  H  Q IYTRAT G
Sbjct: 87  KGTIRMVSAHSSQQIYTRATHG 108


>At4g39200.1 68417.m05550 40S ribosomal protein S25 (RPS25E)
           ribosomal protein S25, Lycopersicon esculentum,
           PIR2:S40089
          Length = 108

 Score = 68.9 bits (161), Expect = 1e-12
 Identities = 29/51 (56%), Positives = 42/51 (82%)
 Frame = +1

Query: 109 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELRKK 261
           +NN VLFD+ TY+KL  E P++KLITP+++S+R+++ GSLARRA+ EL  K
Sbjct: 37  VNNMVLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAK 87



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 258 KGLIKQVVQHHGQVIYTRAT 317
           KG+I+ V  H  Q IYTRAT
Sbjct: 87  KGVIRMVAAHSSQQIYTRAT 106


>At2g21580.1 68415.m02567 40S ribosomal protein S25 (RPS25B)
          Length = 108

 Score = 68.5 bits (160), Expect = 1e-12
 Identities = 29/51 (56%), Positives = 42/51 (82%)
 Frame = +1

Query: 109 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELRKK 261
           +NN VLFD+ TY+KL  E P++KLITP+++S+R+++ GSLARRA+ EL  K
Sbjct: 37  VNNMVLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAK 87



 Score = 29.1 bits (62), Expect = 1.0
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = +3

Query: 258 KGLIKQVVQHHGQVIYTRAT 317
           KGLI+ V  H  Q IYTRAT
Sbjct: 87  KGLIRMVSAHSSQQIYTRAT 106


>At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A) 
          Length = 125

 Score = 67.3 bits (157), Expect = 3e-12
 Identities = 28/51 (54%), Positives = 42/51 (82%)
 Frame = +1

Query: 109 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELRKK 261
           +NN VLFD+ TY+KL  E P++KLITP+++S+RL++ GSLAR+A+ +L  K
Sbjct: 53  VNNMVLFDQATYDKLMSEAPKFKLITPSILSDRLRINGSLARKAIRDLMVK 103


>At5g64950.1 68418.m08170 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 391

 Score = 29.5 bits (63), Expect = 0.76
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -1

Query: 344 SLCDWIIALGRTRVDHLPMMLDYLFDETFFLSSMSALLAREPRTFNLSD 198
           S C W++      +  LP  + YL       S +++LL R+PR FNLS+
Sbjct: 166 SRCGWLLLSRDPNLFLLPN-ISYLETCGIVGSQLASLLRRQPRIFNLSE 213


>At1g14500.1 68414.m01719 ankyrin repeat family protein contains
           Pfam domain, PF00023: Ankyrin repeat
          Length = 436

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -1

Query: 173 YCGTSLYSFSYVGLSN--NTWLFNLSRTFPLDHFFFLALPPPDPSFFFC 33
           +C   LY+F  + + +   TW F +  +  + +   +A+  P+P  F C
Sbjct: 342 FCCALLYTFCLLPIGSLFTTWFFWIGASLGVSYALAMAIISPNPLLFLC 390


>At2g17250.1 68415.m01992 expressed protein weak similarity to
           Ribosome biogenesis protein MAK21 (Swiss-Prot:Q12176)
           [Saccharomyces cerevisiae]
          Length = 577

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 13/47 (27%), Positives = 29/47 (61%)
 Frame = +1

Query: 112 NNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIEL 252
           +++ + +KPT +K   E     L++PA +S+R+K++ + A  + + L
Sbjct: 245 SDESISEKPTDKKKKTEKGDSTLLSPATISKRMKLKFTKAWISFLRL 291


>At3g60980.1 68416.m06824 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 412

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = -1

Query: 353 LYHSLCDWI-IALGRTRVDHLPMMLDYLFDETFFLSSMSALLAREPRTFNLSDTTAGVIS 177
           LYH L D      G    D + +M+D  FD  +F  +M       P+   LSD    +I+
Sbjct: 289 LYHELLDKNGTGKGCLDSDTIKIMVDECFDMGWFSEAMETYKKARPKNDYLSDKY--IIT 346

Query: 176 LYCGTSLYS 150
            +C   + S
Sbjct: 347 RFCENRMLS 355


>At2g23170.1 68415.m02768 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 595

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 147 LICGFIKQHLVVQLVTNFSFGPLLLLGFAAT 55
           ++CG + +H V++L   F+ G L  +GF  T
Sbjct: 213 MLCGLLMRHEVLRLGAVFASGLLRAIGFLQT 243


>At1g24706.1 68414.m03104 expressed protein
          Length = 1781

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 110  NLSRTFPLDHFFFLALPPPDP 48
            +L ++ P DHF    LPPP P
Sbjct: 1562 SLEKSHPDDHFHSQGLPPPPP 1582


>At5g54770.1 68418.m06822 thiazole biosynthetic enzyme, chloroplast
           (ARA6) (THI1) (THI4) identical to SP|Q38814 Thiazole
           biosynthetic enzyme, chloroplast precursor (ARA6)
           {Arabidopsis thaliana}
          Length = 349

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
 Frame = -1

Query: 275 LFDETFFLSSMSAL---LAREPRTFNLSDTTAG 186
           LFD +F  S++SA    +  +PR+F++  TTAG
Sbjct: 18  LFDSSFHGSAISAAPISIGLKPRSFSVRATTAG 50


>At1g48180.1 68414.m05378 expressed protein ; expression supported
           by MPSS
          Length = 239

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 206 LSDTTAGVISLYCGTSLYSFSYVGL 132
           L    + +  +YCGTS    SYVGL
Sbjct: 149 LQQDASAITGIYCGTSGEPASYVGL 173


>At5g44000.1 68418.m05384 glutathione S-transferase C-terminal
           domain-containing protein contains Pfam domain PF00043:
           Glutathione S-transferase, C-terminal domain
          Length = 399

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -3

Query: 261 LFPKLDECSSRQGTSDL*SFR---YDSRCD*LVLWDFLVQFLIC 139
           L P LD+ +  +   ++   R   YD RC   +LWD   + ++C
Sbjct: 161 LIPSLDKANRCRNLKEVYKSRSGGYDGRCTVPMLWDLRKKDVVC 204


>At5g38830.1 68418.m04697 tRNA synthetase class I (C) family protein
           similar to SP|Q06752 Cysteinyl-tRNA synthetase (EC
           6.1.1.16) (Cysteine--tRNA ligase) (CysRS) {Bacillus
           subtilis}; contains Pfam profile PF01406: tRNA
           synthetases class I (C)
          Length = 511

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = -1

Query: 194 TAGVISLY-CGTSLYSFSYVG 135
           T G I LY CG + Y FS++G
Sbjct: 25  TPGKIGLYVCGITAYDFSHIG 45


>At5g27640.1 68418.m03311 eukaryotic translation initiation factor 3
           subunit 9 / eIF-3 eta / eIF3b (TIF3B1) nearly identical
           to SP|Q9C5Z1 Eukaryotic translation initiation factor 3
           subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis
           thaliana}
          Length = 712

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = -1

Query: 173 YCGTSLYSFSYVGLSNNTWLFNLSRTFPL--DHFFFLALPPPDPSF 42
           Y  T++ S   +      W FN    + +  DHFF LA  P  PSF
Sbjct: 566 YVATAVTSVHEMENGFTIWSFNGIMLYRILKDHFFQLAWRPRPPSF 611


>At4g36670.1 68417.m05203 mannitol transporter, putative similar to
           mannitol transporter [Apium graveolens var. dulce]
           GI:12004316; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 493

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 185 VISLYCGTSLYSFSYVGLSNNTWLFNLSRTFPL 87
           V+S+    S  +F  +GL   TW+++ S  FPL
Sbjct: 377 VLSIVAAYSFVAFFSIGLGPITWVYS-SEVFPL 408


>At2g02810.1 68415.m00226 UDP-galactose/UDP-glucose transporter
           contains  transmembrane domains; identical to
           UDP-galactose/UDP-glucose transporter (GI:22651763)
           [Arabidopsis thaliana] similar to UGTrel1 (GI:1669564)
           [Rattus rattus]; identical to cDNA
           UDP-galactose/UDP-glucose transporter GI:22651762
          Length = 332

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 168 WDFLVQFLICGFIKQHLVVQLVTNF 94
           WD L ++ ICG + Q+ +   ++NF
Sbjct: 245 WDIL-KYCICGAVGQNFIFMTISNF 268


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,379,125
Number of Sequences: 28952
Number of extensions: 171885
Number of successful extensions: 545
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 507810264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -