Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30013X
         (352 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12100.1 68416.m01506 cation efflux family protein / metal to...    31   0.22 
At5g07010.1 68418.m00794 sulfotransferase family protein similar...    29   1.2  
At3g16030.1 68416.m02027 lectin protein kinase family protein co...    28   2.0  
At2g29120.1 68415.m03539 glutamate receptor family protein (GLR2...    27   2.7  

>At3g12100.1 68416.m01506 cation efflux family protein / metal
           tolerance protein, putative member of the cation
           diffusion facilitator (CDF) family, or cation efflux
           (CE) family, PMID:11500563
          Length = 393

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = +3

Query: 99  NKYKLCLFSISNNIVNYFLLLDCFFVYLQIKNGTILCTGFFVATLW 236
           N + +CL  IS++I +  L+L  + + L ++N  +LC G    T++
Sbjct: 252 NYHSVCLHVISDSIRSAGLILASWLLSLGVENAEVLCLGLVSVTVF 297


>At5g07010.1 68418.m00794 sulfotransferase family protein similar to
           steroid sulfotransferase 3 [Brassica napus] GI:3420008,
           steroid sulfotransferase 1 [Brassica napus] GI:3420004;
           contains Pfam profile PF00685: Sulfotransferase domain
          Length = 359

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 289 TETVKNSH*AQCLVEAGNHNVATKNPVHRIVPFF 188
           T T+ N H    +  + NH + T NP H +VPFF
Sbjct: 111 TFTILNRHRFDPVASSTNHPLFTSNP-HDLVPFF 143


>At3g16030.1 68416.m02027 lectin protein kinase family protein
           contains Pfam domains PF00069: Protein kinase domain and
           PF01453: Lectin (probable mannose binding)
          Length = 850

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -2

Query: 240 GTTMSRQRTLYIESC-RFLFVNRQKNNRGEESNLQYYSI*RRDRVYICYVSCILN 79
           G T +R +T  +  C RF +  R+  +   E+   +  I RR   Y CYV C+ N
Sbjct: 321 GYTYTR-KTYDLSYCSRFGYTFRETVSPSAENGFVFNEIGRRLSSYDCYVKCLQN 374


>At2g29120.1 68415.m03539 glutamate receptor family protein (GLR2.7)
           plant glutamate receptor family, PMID:11379626
          Length = 926

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 126 ISNNIVNYFLLLDCFFVYLQIKNGTILCTGFFVATLWFPAST 251
           + +N+  + +L+ CF V + I++ T   T FF   L  P  T
Sbjct: 612 VVSNLARFVVLVWCFVVLVLIQSYTANLTSFFTVKLLQPTVT 653


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,811,210
Number of Sequences: 28952
Number of extensions: 133270
Number of successful extensions: 275
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 439384704
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)