Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30010X
         (566 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07671.1 68415.m00894 H+-transporting two-sector ATPase, C su...    44   7e-05
At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR...    28   5.0  
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID...    28   5.0  
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro...    27   6.6  
At1g12500.1 68414.m01447 phosphate translocator-related low simi...    27   6.6  
At5g16620.1 68418.m01946 hydroxyproline-rich glycoprotein family...    27   8.7  
At5g11040.1 68418.m01290 expressed protein weak similarity to hy...    27   8.7  
At3g52110.1 68416.m05719 expressed protein                             27   8.7  

>At2g07671.1 68415.m00894 H+-transporting two-sector ATPase, C
           subunit family protein similar to ATPase subunit 9
           [Arabidopsis thaliana] GI:15215920; contains Pfam
           profile PF00137: ATP synthase subunit C
          Length = 85

 Score = 44.0 bits (99), Expect = 7e-05
 Identities = 21/31 (67%), Positives = 24/31 (77%)
 Frame = +3

Query: 312 FGSLIIGYSRNPSLKQQLFSYAILGFALSEA 404
           F SLI   +RNPSL +Q F YAILGFAL+EA
Sbjct: 39  FSSLIHSVARNPSLAKQSFGYAILGFALTEA 69


>At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1095

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +2

Query: 47  LIKTKCCLPPD*SPLQPGLPSSATLH--WCDHLQQYPPI 157
           L++  CC   +  P    LPS   LH  +C  LQ +P I
Sbjct: 682 LLEMSCCKKLEIIPTNINLPSLEVLHFRYCTRLQTFPEI 720


>At1g67120.1 68414.m07636 midasin-related similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q12019)
            [Saccharomyces cerevisiae]; similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
            sapiens]; contains Prosite PS00017: ATP/GTP-binding site
            motif A (P-loop)
          Length = 5336

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -1

Query: 251  NLAAESMSLVTDVVWKDRTAESCVGTAGTICVWVGTAASGRTS 123
            N+A+E + L+ ++         CV     +C+ VG ++SG+TS
Sbjct: 2028 NIASEQLKLLPEIRQNLEAVAHCVQNKW-LCILVGPSSSGKTS 2069


>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
           protein contains similarity to SP|Q02917 Early nodulin
           55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
           domain
          Length = 370

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 298 VLEQSSAPSSSAIPGTPPSNSSCSHTPFWVSP 393
           V  Q SAP+ S +P   P+    SH+P  VSP
Sbjct: 130 VRNQPSAPAHSPVPSVSPTQPPKSHSP--VSP 159


>At1g12500.1 68414.m01447 phosphate translocator-related low
           similarity to glucose-6-phosphate/phosphate-translocator
           precursor [Zea mays] GI:2997589,
           phosphoenolpyruvate/phosphate translocator precursor
           [Mesembryanthemum crystallinum] GI:9295275,
           SP|P21727|CPTR_PEA Triose phosphate/phosphate
           translocator, chloroplast precursor (CTPT) {Pisum
           sativum}
          Length = 361

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 289 PELVLEQSSAPSSSAIPGTPPSNSSCSH-TPFWVS 390
           P      ++AP+   IPGTPP +S+ S   PF++S
Sbjct: 15  PRFDAAATAAPTIVDIPGTPPHSSASSPLKPFFLS 49


>At5g16620.1 68418.m01946 hydroxyproline-rich glycoprotein family
           protein contains proline rich extensin domains,
           INTERPRO:IPR002965
          Length = 447

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +1

Query: 304 EQSSAPSSSAIPGTPPSNSSCSHTPFWV 387
           +Q+++ +S ++P  PPS+S+     FW+
Sbjct: 85  QQTTSVASPSVPVPPPSSSTIGSPLFWI 112


>At5g11040.1 68418.m01290 expressed protein weak similarity to
            hypercellular protein [Aspergillus nidulans] GI:9309269
          Length = 1186

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 234  NVLSDRCGLEGPHCRELCRDSRYHLCMGG 148
            NVL  R G   P+    CR   +H+C+ G
Sbjct: 1155 NVLRARAGTASPNEPIFCRGPPFHVCVAG 1183


>At3g52110.1 68416.m05719 expressed protein 
          Length = 362

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = -2

Query: 133 VAPVQSCRRWQTWLQGRSVWRQTAFCFYKVRRATTKNTEKEETG 2
           V  ++S +  +    GR ++   +   Y+++R  T+ TE+E+TG
Sbjct: 136 VPRLKSTQSARNLFSGRDIFGHISDFCYELKRLATRVTEREDTG 179


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,178,376
Number of Sequences: 28952
Number of extensions: 239046
Number of successful extensions: 904
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)