Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30008X
         (594 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi...   125   2e-29
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi...   120   6e-28
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi...   120   6e-28
At2g22340.1 68415.m02651 hypothetical protein                          33   0.19 
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP...    30   1.3  
At2g07020.1 68415.m00803 protein kinase family protein contains ...    30   1.3  
At3g15920.1 68416.m02013 phox (PX) domain-containing protein wea...    29   2.3  
At3g54570.1 68416.m06038 calmodulin-binding protein-related cont...    29   3.1  
At3g20040.1 68416.m02535 hexokinase, putative similar to hexokin...    28   5.4  
At3g45620.1 68416.m04927 transducin family protein / WD-40 repea...    27   9.4  

>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
           to laminin receptor-like protein GB:U01955 [Arabidopsis
           thaliana]; identical to cDNA laminin receptor homologue
           GI:16379
          Length = 298

 Score =  125 bits (302), Expect = 2e-29
 Identities = 56/85 (65%), Positives = 67/85 (78%)
 Frame = +1

Query: 253 PADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 432
           P D+ V S+RP+GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EPRLLI+ DP  D
Sbjct: 75  PQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 134

Query: 433 HQPITEASYVNIPVIALCNTDSPLR 507
           HQPI E +  NIP+IA C+TDSP+R
Sbjct: 135 HQPIKEGALGNIPIIAFCDTDSPMR 159



 Score = 85.4 bits (202), Expect = 3e-17
 Identities = 38/64 (59%), Positives = 47/64 (73%)
 Frame = +2

Query: 65  LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 244
           L+  E DV  M AA  HLG +N N+QME YV+KRR DG ++ NL +TWEKL +AAR +VA
Sbjct: 12  LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVA 71

Query: 245 IENP 256
           IENP
Sbjct: 72  IENP 75



 Score = 30.7 bits (66), Expect = 0.77
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +3

Query: 498 PTKIVDIAIPCNTKSSHSIG 557
           P + VDI IP N K  HSIG
Sbjct: 157 PMRFVDIGIPANNKGKHSIG 176


>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 280

 Score =  120 bits (290), Expect = 6e-28
 Identities = 54/84 (64%), Positives = 64/84 (76%)
 Frame = +1

Query: 253 PADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 432
           P D+ V S+RP+GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP  D
Sbjct: 76  PKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 135

Query: 433 HQPITEASYVNIPVIALCNTDSPL 504
           HQPI E +  NIP IA C+TDSP+
Sbjct: 136 HQPIKEGALGNIPTIAFCDTDSPM 159



 Score = 85.0 bits (201), Expect = 3e-17
 Identities = 36/60 (60%), Positives = 47/60 (78%)
 Frame = +2

Query: 77  EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 256
           E D+  ML+A  HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76



 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +3

Query: 498 PTKIVDIAIPCNTKSSHSIG 557
           P   VDI IP N K  HSIG
Sbjct: 158 PMGFVDIGIPANNKGKHSIG 177


>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 332

 Score =  120 bits (290), Expect = 6e-28
 Identities = 54/84 (64%), Positives = 64/84 (76%)
 Frame = +1

Query: 253 PADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 432
           P D+ V S+RP+GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP  D
Sbjct: 76  PKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 135

Query: 433 HQPITEASYVNIPVIALCNTDSPL 504
           HQPI E +  NIP IA C+TDSP+
Sbjct: 136 HQPIKEGALGNIPTIAFCDTDSPM 159



 Score = 85.0 bits (201), Expect = 3e-17
 Identities = 36/60 (60%), Positives = 47/60 (78%)
 Frame = +2

Query: 77  EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 256
           E D+  ML+A  HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76



 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +3

Query: 498 PTKIVDIAIPCNTKSSHSIG 557
           P   VDI IP N K  HSIG
Sbjct: 158 PMGFVDIGIPANNKGKHSIG 177


>At2g22340.1 68415.m02651 hypothetical protein
          Length = 358

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 115 SWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSC 234
           SW     LP+GD  +Q  C WY   +  S +G+  +   C
Sbjct: 188 SWTEASLLPEGDCFIQLNCLWYKPKEDTSVMGRKMASSDC 227


>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
           identical to SP|Q9GCB9 Mitochondrial ribosomal protein
           S2 {Arabidopsis thaliana}; contains Pfam profile
           PF00318: ribosomal protein S2
          Length = 219

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +1

Query: 397 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRLWTLLSH 528
           P  ++V D  +    I EAS + IPV+A+ + + PL  +  +++
Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITY 174


>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 352 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 453
           TP   TNQ++ A  E     +LDP     PI EA
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEA 653


>At3g15920.1 68416.m02013 phox (PX) domain-containing protein weak
           similarity to myosin heavy chain [Rana catesbeiana]
           GI:4249699; contains Pfam profile PF00787: PX domain
          Length = 755

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 22/86 (25%), Positives = 43/86 (50%)
 Frame = +2

Query: 35  SATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEK 214
           S+++S  +++LA ++  +  ++A T  L  E    ++ +  ++    GT  +  +   E 
Sbjct: 647 SSSLSEAIELLATSDNRIGLLIAETQLLSEEVEKLKLTSGGHR----GTDDLVRKMLTEV 702

Query: 215 LVLAARAVVAIENPLMCSSSHHGPSV 292
           L+  AR    + + L CS S HG SV
Sbjct: 703 LIDNARLRKQVNSVLRCSLSGHGISV 728


>At3g54570.1 68416.m06038 calmodulin-binding protein-related
           contains similarity to potato calmodulin-binding protein
           PCBP GI:17933110 from [Solanum tuberosum]
          Length = 417

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 551 RVGRLGVAWDSNVHNLSGESVL 486
           R GR+G  WD+NVH  +  S+L
Sbjct: 107 RSGRIGRCWDANVHRATCSSLL 128


>At3g20040.1 68416.m02535 hexokinase, putative similar to hexokinase
           1 [Spinacia oleracea] Swiss-Prot:Q9SEK3
          Length = 488

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = +3

Query: 408 DCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKIVDIAIPCNTKSSHSIGFD--VGGCW 578
           D I  C  P T   S +       F   RLP    D+ +   + +S+ +GF+  +GG +
Sbjct: 264 DAIIKCQNPRTTSGSMVVNMEWGNFWSSRLPRTSYDLELDAESMNSNDMGFEKMIGGMY 322


>At3g45620.1 68416.m04927 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats;  similar to
           PC326 protein  (GI:200241) (PIR2:S37694) [Mus
           musculus];Human (H326) translated mRNA - Homo sapiens,
           EMBL:HS06631
          Length = 481

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +1

Query: 454 SYVNIPVIALCNTDSPLRLWTLLSH 528
           S+ +IP++A C  +  ++LWT +S+
Sbjct: 371 SHPHIPLLASCGIEKSVKLWTPMSN 395


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,347,801
Number of Sequences: 28952
Number of extensions: 321400
Number of successful extensions: 717
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)