Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30007
         (635 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05680.1 68416.m00634 expressed protein                             29   2.6  
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel...    29   3.4  
At1g70620.2 68414.m08137 cyclin-related contains weak similarity...    28   4.5  
At1g70620.1 68414.m08138 cyclin-related contains weak similarity...    28   4.5  
At4g03460.1 68417.m00473 ankyrin repeat family protein contains ...    28   6.0  
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa...    27   7.9  

>At3g05680.1 68416.m00634 expressed protein
          Length = 2057

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +2

Query: 362  NGYQPQSELLPVAPPMPEAIRRAIDYILAH-PPKTETVKKL*IQKIQSTTPPPKKSGLYF 538
            +G Q       + PP+P AI +      A  PP+T TV+          T   ++SG   
Sbjct: 1793 HGTQSSGGPTRLMPPLPSAIPQYSSNPYASLPPRTSTVQSFGYNHAGVGTTEQQQSGPTI 1852

Query: 539  EHHTLSISIT 568
            +H + ++S+T
Sbjct: 1853 DHQSGNLSVT 1862


>At3g19430.1 68416.m02464 late embryogenesis abundant
           protein-related / LEA protein-related similar to late
           embryogenesis abundant protein [Picea glauca] GI:1350543
          Length = 559

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +2

Query: 356 DENGYQPQSELLPVAPPMPEAIRRAIDYILAHPPKTETVKKL*IQKIQSTTPP 514
           D+ GY P + + PV+PP P     +    ++ PP T T        + S TPP
Sbjct: 68  DDGGYTPPAPVPPVSPPPPTPSVPSPTPPVSPPPPTPT------PSVPSPTPP 114


>At1g70620.2 68414.m08137 cyclin-related contains weak similarity to
           Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
           I) [Bos taurus]
          Length = 884

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +2

Query: 296 QGQYEYSAPDGTPVKFTYTADENG---YQPQSELLPVAPPMPEA 418
           QGQ  YS+P   P +  + A  NG   + P S   P+ PP P+A
Sbjct: 78  QGQ-PYSSPAYPPHQPPFNAGANGNSQFPPPSTGAPIPPPYPQA 120


>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
           Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
           I) [Bos taurus]
          Length = 897

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +2

Query: 296 QGQYEYSAPDGTPVKFTYTADENG---YQPQSELLPVAPPMPEA 418
           QGQ  YS+P   P +  + A  NG   + P S   P+ PP P+A
Sbjct: 78  QGQ-PYSSPAYPPHQPPFNAGANGNSQFPPPSTGAPIPPPYPQA 120


>At4g03460.1 68417.m00473 ankyrin repeat family protein contains
           ankyrin repeat domains, Pfam:PF00023
          Length = 677

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 460 DRNREKVINPEDSEHNAP 513
           D+N+EK+IN ED+  N P
Sbjct: 409 DKNKEKLINEEDANGNTP 426


>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
            protein contains Pfam profile: PF00097 zinc finger, C3HC4
            type (RING finger)
          Length = 4706

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +3

Query: 153  SEADAVILRS--DTEVNPDGFSFGYETDNGISAQSSDP*RKLIISMFSPSKVNMNT 314
            S  D+ I+R    TE+  DGF  G +    IS Q  +   +++I + S S+V+ +T
Sbjct: 2944 SLTDSTIIRMPLSTEILKDGFEAGLDRVKQISDQFLENASRILIFLKSVSQVSFST 2999


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,953,814
Number of Sequences: 28952
Number of extensions: 222926
Number of successful extensions: 565
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)