Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30005
         (434 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16141.1 68417.m02446 expressed protein contains 1 predicted ...    30   0.77 
At4g15840.1 68417.m02409 expressed protein                             30   0.77 
At2g21300.1 68415.m02535 kinesin motor family protein contains P...    27   4.1  
At5g07790.1 68418.m00892 expressed protein                             27   5.5  
At4g03610.1 68417.m00496 phosphonate metabolism protein-related ...    27   5.5  
At3g01270.1 68416.m00033 pectate lyase family protein similar to...    26   9.5  

>At4g16141.1 68417.m02446 expressed protein contains 1 predicted
           transmembrane domain; contains a partial Pfam PF00320:
           GATA zinc finger profile
          Length = 226

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = -1

Query: 365 KTEKVRSWSDVENG*CLASPHGVGATMAAAVNCDTMLRPL 246
           K E     SDV+NG C +S  G G T    V+C T   PL
Sbjct: 11  KLESAGDSSDVDNGNCSSSGSG-GDTKKTCVDCGTSRTPL 49


>At4g15840.1 68417.m02409 expressed protein
          Length = 660

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +1

Query: 160 ISGSRARFQLSGNSGRKHSRCCTSILRKFSGRSIVS 267
           +SGS   FQ S NS     R CTS++ K  G S+V+
Sbjct: 115 VSGSNLVFQQSSNSQTNFGRPCTSVVDKTEG-SVVA 149


>At2g21300.1 68415.m02535 kinesin motor family protein contains Pfam
           profile: kinesin motor domain PF00225
          Length = 862

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +1

Query: 70  KLKEHGASSCISGKRGRRCCNIWHWGSVDSISG 168
           K+ EH ASS       R   N W  GSV  ISG
Sbjct: 425 KMVEHDASSKAGTPHFRNRTNKWEDGSVSEISG 457


>At5g07790.1 68418.m00892 expressed protein
          Length = 616

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 91  SSCISGKRGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSI 234
           S  +  KR RR   +   G+   +S + A   +S  SGR+ + C TS+
Sbjct: 411 SGRVKRKRSRRISLVAE-GNYQQVSAAEAIVDISRKSGRETAACITSL 457


>At4g03610.1 68417.m00496 phosphonate metabolism protein-related
           weak similarity to PhnP protein. (Swiss-Prot:P16692)
           [Escherichia coli]
          Length = 290

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = -1

Query: 164 LMESTDPQCHILQHRRPRLPLMQLEAPCS----FNFCSLRAIRRYKSYYVD*G 18
           L++ +DP CH+       LP +     C+     ++CS     R+K   +D G
Sbjct: 30  LLQPSDPPCHVCSQSLSLLPHLNPNYRCNTSLLIDYCSKEEDGRHKYILIDVG 82


>At3g01270.1 68416.m00033 pectate lyase family protein similar to
           pectate lyase P59 SP:P15722 from [Lycopersicon
           esculentum]
          Length = 475

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +1

Query: 136 WHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFSGRSIVSQLTAAA 285
           W+W S   +  + A F+ SGN   K S     +++  +G + VS+LT  A
Sbjct: 416 WNWRSEKDVFMNNAYFRQSGNPHFKCSHSRQQMIKPKNGMA-VSKLTKYA 464


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,871,276
Number of Sequences: 28952
Number of extensions: 164032
Number of successful extensions: 364
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)