Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30001
         (719 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03830.1 68418.m00352 expressed protein hypothetical protein ...    33   0.14 
At2g44510.1 68415.m05534 p21Cip1-binding protein-related similar...    33   0.19 
At5g32470.1 68418.m03828 expressed protein                             31   0.58 
At2g34710.1 68415.m04263 homeobox-leucine zipper transcription f...    29   3.1  
At4g32920.1 68417.m04685 glycine-rich protein                          29   4.1  
At3g57650.1 68416.m06423 acyl-CoA:1-acylglycerol-3-phosphate acy...    29   4.1  
At3g63070.1 68416.m07084 PWWP domain-containing protein putative...    28   7.2  
At5g47020.1 68418.m05795 glycine-rich protein strong similarity ...    27   9.5  
At5g11700.1 68418.m01367 glycine-rich protein predicted protein,...    27   9.5  
At3g51740.1 68416.m05673 leucine-rich repeat transmembrane prote...    27   9.5  

>At5g03830.1 68418.m00352 expressed protein hypothetical protein
           F4I1.32, Arabidopsis thaliana, PIR:T02406
          Length = 265

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
 Frame = -3

Query: 507 IKYILADDSQHTGLVINERILNIPAAISVPLF------ASLQTELEKAHRKNMLYNFKYL 346
           ++ +L   ++  GL++++R++N+P  +  PL+       S  TE E        + FK  
Sbjct: 161 LELLLEKKAKDVGLLVSQRVMNLPLQLLPPLYDGLFDEVSWATEDEPTEELRGSFRFKSY 220

Query: 345 IWISKTYTTGESSEVL 298
           I I+K Y     S +L
Sbjct: 221 ILIAKIYKLSSWSFIL 236


>At2g44510.1 68415.m05534 p21Cip1-binding protein-related similar to
           p21Cip1-binding protein TOK-1beta (GI:7339688) [Homo
           sapiens]; similar to BRCA2 and Cip1/p21 interacting
           protein (GI:25989375) [Homo sapiens]
          Length = 326

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 16/67 (23%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
 Frame = -3

Query: 507 IKYILADDSQHTGLVINERILNIPAAISVPLFASLQTEL------EKAHRKNMLYNFKYL 346
           ++ +L   +Q  GL++++R++N+P  +  PL+  L  E+      E   +    + FK  
Sbjct: 179 LEMLLEKKAQDVGLLVSQRVMNLPPQLLPPLYDGLFDEVSWAIEDEPTEKLRRSFRFKSY 238

Query: 345 IWISKTY 325
           + ++K Y
Sbjct: 239 LLVTKIY 245


>At5g32470.1 68418.m03828 expressed protein
          Length = 575

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -2

Query: 205 YEGGALTPCRKILLFEGIKFGYLIDL 128
           Y  GA+TPC ++  F G +FG L+DL
Sbjct: 205 YTLGAVTPCMRLYAFLGKEFGSLLDL 230


>At2g34710.1 68415.m04263 homeobox-leucine zipper transcription
           factor (HB-14) identical to homeodomain transcription
           factor (ATHB-14)GP:3132474 GB:Y11122 [Arabidopsis
           thaliana];
          Length = 852

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 650 PMGSDGVFGVTTVVNITKGK 591
           PMGSDG   VT ++N++ GK
Sbjct: 427 PMGSDGAEDVTVMINLSPGK 446


>At4g32920.1 68417.m04685 glycine-rich protein 
          Length = 1432

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 223  DLSQWDYEGGALTPCRKILLFEGIKFGYLIDLMKAEVE 110
            D  + +Y+   L  CR   L+EG+K     DLM A ++
Sbjct: 1028 DFVRSEYDHSCLRSCRSRALYEGLKVAATPDLMLAHLD 1065


>At3g57650.1 68416.m06423 acyl-CoA:1-acylglycerol-3-phosphate
           acyltransferase, putative similar to
           acyl-CoA:1-acylglycerol-3-phosphate acyltransferase
           GI:4583544 from [Brassica napus]
          Length = 389

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +1

Query: 559 FL*SVATLGSFFPLVIFTTVVTPKT--PSLPIGLIIGHPSLDH 681
           F+ +V+ + SF P +   TV  PKT  P   + L  G PS+ H
Sbjct: 206 FVSAVSNMRSFVPAIYDMTVTIPKTSPPPTMLRLFKGQPSVVH 248


>At3g63070.1 68416.m07084 PWWP domain-containing protein putative
            transcription factor HUA2, Arabidopsis thaliana,
            EMBL:AF116556
          Length = 1347

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 555  PISLICGHTGVIFSLSNIHYCSYSKNSITTHR 650
            P S++  H   + SLSN+  C YS+ S  T R
Sbjct: 971  PESIVRHHIRELDSLSNVPACLYSRRSARTER 1002


>At5g47020.1 68418.m05795 glycine-rich protein strong similarity to
            unknown protein (emb|CAB87688.1)
          Length = 1417

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 205  YEGGALTPCRKILLFEGIKFGYLIDLMKAEVE 110
            Y+   L  CR   L++G+K G   DLM A ++
Sbjct: 1013 YDHSCLRSCRSRALYKGMKVGATPDLMVAYID 1044


>At5g11700.1 68418.m01367 glycine-rich protein predicted protein,
            Arabidopsis thaliana
          Length = 1411

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 208  DYEGGALTPCRKILLFEGIKFGYLIDLMKAEVE 110
            +Y+   L  CR   L+EG+K     DLM A ++
Sbjct: 1036 EYDHSCLRSCRSRALYEGLKVAATSDLMLAYLD 1068


>At3g51740.1 68416.m05673 leucine-rich repeat transmembrane protein
           kinase, putative brassinosteroid-insensitive protein
           BRI1 - Arabidopsis thaliana, PIR:T09356
          Length = 836

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +3

Query: 597 LSNIHYCSYSKNSITTHRPHHRSSLLGPSSKQ 692
           L NI  C YS ++      HH    L P+S Q
Sbjct: 413 LGNIQLCGYSSSNPCPAPDHHHPLTLSPTSSQ 444


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,722,804
Number of Sequences: 28952
Number of extensions: 291903
Number of successful extensions: 725
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)