Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10405
         (814 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...    95   4e-20
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...    94   9e-20
At3g14790.1 68416.m01869 NAD-dependent epimerase/dehydratase fam...    23   7.0  
At5g29000.2 68418.m03590 myb family transcription factor contain...    28   8.5  
At5g29000.1 68418.m03589 myb family transcription factor contain...    28   8.5  

>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score = 95.5 bits (227), Expect = 4e-20
 Identities = 49/109 (44%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
 Frame = +1

Query: 7   AWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQG-LTRAFRNIPGVEXXXXXX 183
           A+ D  K   S  +R GKGKMRNRR I RKGPL++F  +   + +AFRN+PGVE      
Sbjct: 182 AYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVFGTEGAKIVKAFRNLPGVELCHVER 241

Query: 184 XXXXXXAPGGHLGRFVIWTQSAFGGLTPYSGHGRHHQNKRRTSTCPNRR 330
                 APGGHLGRFVIWT+SAF  L    G       K++    P  +
Sbjct: 242 LNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAK 290



 Score = 78.6 bits (185), Expect = 5e-15
 Identities = 36/83 (43%), Positives = 53/83 (63%)
 Frame = +3

Query: 255 RLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNP 434
           +L+ ++GS++ PS++KK + LP+ KM N DL R++ SDE++ V+        RA  K NP
Sbjct: 266 KLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEVQSVVNPIKDGSKRAVLKKNP 325

Query: 435 LTNNKAMLKLNPYAAVLKRKAIL 503
           L N   M KLNPYA   KR ++L
Sbjct: 326 LKNLNVMFKLNPYAKTAKRMSLL 348


>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score = 94.3 bits (224), Expect = 9e-20
 Identities = 48/109 (44%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
 Frame = +1

Query: 7   AWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQG-LTRAFRNIPGVEXXXXXX 183
           A+ D  K   S  +R GKGKMRNRR I RKGPL+++  +   + +AFRN+PGVE      
Sbjct: 181 AYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVYGTEGSKIVKAFRNLPGVELCHVER 240

Query: 184 XXXXXXAPGGHLGRFVIWTQSAFGGLTPYSGHGRHHQNKRRTSTCPNRR 330
                 APGGHLGRFVIWT+SAF  L    G       K++    P  +
Sbjct: 241 LNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAK 289



 Score = 84.6 bits (200), Expect = 7e-17
 Identities = 40/87 (45%), Positives = 57/87 (65%)
 Frame = +3

Query: 255 RLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNP 434
           +L+ ++GS++ PS++KK + LP+ KM N DL R++ SDEI+ V+    K   RA  K NP
Sbjct: 265 KLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEIQSVVNPIKKDAKRAVLKKNP 324

Query: 435 LTNNKAMLKLNPYAAVLKRKAILELAE 515
           L N   MLKLNPYA   KR ++L  A+
Sbjct: 325 LKNLNVMLKLNPYAKTAKRMSLLAEAQ 351


>At3g14790.1 68416.m01869 NAD-dependent epimerase/dehydratase family
           protein similar to dTDP-glucose 4,6-dehydratase from
           Aneurinibacillus thermoaerophilus GI:16357461,
           Saccharopolyspora spinosa GI:15077647, RmlB from
           Leptospira borgpetersenii GI:4234803; contains Pfam
           profile PF01370 NAD dependent epimerase/dehydratase
           family
          Length = 664

 Score = 23.4 bits (48), Expect(2) = 7.0
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +3

Query: 369 EIRKVLRAPNKRVIRATRKLNPLTNNKA--MLKLNPYAAVLKRKAILELAEGRT 524
           +IR+ +      V   T +   + N++A  +L  NPY+A      +L +A GR+
Sbjct: 123 QIRRFIHVSTDEVYGETDEDASVGNHEASQLLPTNPYSATKAGAEMLVMAYGRS 176



 Score = 23.0 bits (47), Expect(2) = 7.0
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 288 PSKQKKNFNLPQPKMANTDLTR-LLKSDEIRKVL 386
           PSK   NF   +  +A+ DL   LL ++EI  ++
Sbjct: 52  PSKSSPNFKFVKGDIASADLVNYLLITEEIDTIM 85


>At5g29000.2 68418.m03590 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 413

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 208 GGHLGRFVIWTQSAFGGLTPYSGHGRHHQNKRRTSTCPNRR 330
           GG+ G ++  + S +  ++    HGR+ QN+   ST P  R
Sbjct: 55  GGNSGGYLFPSSSGYCNVSAVLPHGRNLQNQPPVSTVPRDR 95


>At5g29000.1 68418.m03589 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 370

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 208 GGHLGRFVIWTQSAFGGLTPYSGHGRHHQNKRRTSTCPNRR 330
           GG+ G ++  + S +  ++    HGR+ QN+   ST P  R
Sbjct: 12  GGNSGGYLFPSSSGYCNVSAVLPHGRNLQNQPPVSTVPRDR 52


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,561,100
Number of Sequences: 28952
Number of extensions: 276175
Number of successful extensions: 776
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1853336000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)