Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10400
(382 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 88 2e-18
At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) simila... 86 9e-18
At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) simila... 86 9e-18
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila... 85 1e-17
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila... 85 1e-17
At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic c... 30 0.45
At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic c... 30 0.45
At1g11130.1 68414.m01274 leucine-rich repeat family protein / pr... 29 1.0
At5g65420.1 68418.m08227 cyclin, putative similar to cyclin D2.1... 27 3.2
At3g01380.1 68416.m00060 phosphatidylinositolglycan class N (PIG... 27 5.6
At3g49400.1 68416.m05400 transducin family protein / WD-40 repea... 26 7.4
At3g01450.1 68416.m00069 expressed protein 26 9.7
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 88.2 bits (209), Expect = 2e-18
Identities = 43/84 (51%), Positives = 61/84 (72%)
Frame = +3
Query: 3 GKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKL 182
GK V+FV R+I+ P V +RPR+RTLTSV++A+LED+ FPAEIVGKR R +L
Sbjct: 90 GKDVIFVTTRRIMRPPKKGAAV----QRPRNRTLTSVHEAMLEDVAFPAEIVGKRTRYRL 145
Query: 183 DGSQLIKVHLDKNQQTTIEHKVDT 254
DGS+++KV LD ++ E+K++T
Sbjct: 146 DGSKIMKVFLDAKEKNNTEYKLET 169
Score = 29.1 bits (62), Expect = 1.0
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +2
Query: 263 VYKKLTGREVTFEFP 307
VY+KLTG++V FE+P
Sbjct: 173 VYRKLTGKDVVFEYP 187
>At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 85.8 bits (203), Expect = 9e-18
Identities = 44/91 (48%), Positives = 66/91 (72%), Gaps = 1/91 (1%)
Frame = +3
Query: 3 GKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKL 182
GK V+ + R+I+ +P K A KRPR+RTLTSV++AIL+D+V PAEIVGKR R +L
Sbjct: 90 GKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSVHEAILDDVVLPAEIVGKRTRYRL 145
Query: 183 DGSQLIKVHLDKNQQTTIEHKVDT-SSLYTR 272
DG++++KV LD ++ E+KV+ S++Y +
Sbjct: 146 DGTKIMKVFLDPKERNNTEYKVEAFSAVYKK 176
Score = 31.9 bits (69), Expect = 0.15
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +2
Query: 260 SVYKKLTGREVTFEFP 307
+VYKKLTG++V FEFP
Sbjct: 172 AVYKKLTGKDVVFEFP 187
>At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 85.8 bits (203), Expect = 9e-18
Identities = 44/91 (48%), Positives = 66/91 (72%), Gaps = 1/91 (1%)
Frame = +3
Query: 3 GKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKL 182
GK V+ + R+I+ +P K A KRPR+RTLTSV++AIL+D+V PAEIVGKR R +L
Sbjct: 90 GKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSVHEAILDDVVLPAEIVGKRTRYRL 145
Query: 183 DGSQLIKVHLDKNQQTTIEHKVDT-SSLYTR 272
DG++++KV LD ++ E+KV+ S++Y +
Sbjct: 146 DGTKIMKVFLDPKERNNTEYKVEAFSAVYKK 176
Score = 31.9 bits (69), Expect = 0.15
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +2
Query: 260 SVYKKLTGREVTFEFP 307
+VYKKLTG++V FEFP
Sbjct: 172 AVYKKLTGKDVVFEFP 187
>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 85.4 bits (202), Expect = 1e-17
Identities = 41/84 (48%), Positives = 61/84 (72%)
Frame = +3
Query: 3 GKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKL 182
GK V+FV R+I+ P + V +RPR+RTLTSV++A+LED+ +PAEIVGKR R +L
Sbjct: 90 GKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSVHEAMLEDVAYPAEIVGKRTRYRL 145
Query: 183 DGSQLIKVHLDKNQQTTIEHKVDT 254
DG++++KV LD + E+K++T
Sbjct: 146 DGTKIMKVFLDSKLKNDTEYKLET 169
Score = 29.1 bits (62), Expect = 1.0
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +2
Query: 263 VYKKLTGREVTFEFP 307
VY+KLTG++V FE+P
Sbjct: 173 VYRKLTGKDVVFEYP 187
>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 85.4 bits (202), Expect = 1e-17
Identities = 41/84 (48%), Positives = 61/84 (72%)
Frame = +3
Query: 3 GKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKL 182
GK V+FV R+I+ P + V +RPR+RTLTSV++A+LED+ +PAEIVGKR R +L
Sbjct: 90 GKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSVHEAMLEDVAYPAEIVGKRTRYRL 145
Query: 183 DGSQLIKVHLDKNQQTTIEHKVDT 254
DG++++KV LD + E+K++T
Sbjct: 146 DGTKIMKVFLDSKLKNDTEYKLET 169
Score = 29.1 bits (62), Expect = 1.0
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +2
Query: 263 VYKKLTGREVTFEFP 307
VY+KLTG++V FE+P
Sbjct: 173 VYRKLTGKDVVFEYP 187
>At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP|O43684)[Homo sapiens]
Length = 340
Score = 30.3 bits (65), Expect = 0.45
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 74 QTKEATLKDIDLCVRCYPRGLG 139
Q +E++LK CVRCYP G G
Sbjct: 179 QRRESSLKYQTRCVRCYPNGTG 200
>At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP:O43684)[Homo sapiens]
Length = 339
Score = 30.3 bits (65), Expect = 0.45
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 74 QTKEATLKDIDLCVRCYPRGLG 139
Q +E++LK CVRCYP G G
Sbjct: 178 QRRESSLKYQTRCVRCYPNGTG 199
>At1g11130.1 68414.m01274 leucine-rich repeat family protein /
protein kinase family protein contains leucine
rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to leucine-rich
repeat transmembrane protein kinase 2 [Zea mays]
gi|3360291|gb|AAC27895
Length = 768
Score = 29.1 bits (62), Expect = 1.0
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = -1
Query: 193 CEPSNLTLMRLPTISAGKTKSSRIASYTEVNVLE 92
C+ SN+T +R+P + G S +A ++ + V++
Sbjct: 66 CDSSNITEIRIPGMKVGGGLSDTLADFSSIQVMD 99
>At5g65420.1 68418.m08227 cyclin, putative similar to cyclin D2.1
protein [Nicotiana tabacum] GI:4160298; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain
Length = 308
Score = 27.5 bits (58), Expect = 3.2
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -1
Query: 271 LVYRLEVSTLCSIVVCWFLSKCTLMSCEPSNLTLMRLPTISAGKTK 134
L +RL T CS + +FL K + EPSN + R + A TK
Sbjct: 173 LKWRLRAITPCSYIR-YFLRKMSKCDQEPSNTLISRSLQVIASTTK 217
>At3g01380.1 68416.m00060 phosphatidylinositolglycan class N (PIG-N)
family protein similar to phosphatidylinositolglycan
class N short form GB:BAA82620 [gi:5631308] [Mus
musculus]
Length = 921
Score = 26.6 bits (56), Expect = 5.6
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -1
Query: 232 VVCWFLSKCTLMSCE-PSNLTLMRLPTISAGKT 137
+ CWFLS TLM E P N L+ P + A T
Sbjct: 647 ISCWFLSVFTLMPAEIPDNNNLVS-PFLGANDT 678
>At3g49400.1 68416.m05400 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400); low
similarity (47%) to Agamous-like MADS box protein AGL5
(SP:P29385) {Arabidopsis thaliana}
Length = 892
Score = 26.2 bits (55), Expect = 7.4
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = -1
Query: 244 LCSIVVCWFLSKCTLMSCEPSNLTLMRLPTISAGKTKSSRIASYTEVNVLERGLFC 77
+C WF C M+ E + TL LP+ + KS +S+++V LFC
Sbjct: 820 VCPPTPLWFCKCCNRMTLELAPETLFALPSFPS-DLKSLPKSSFSKVASKPFCLFC 874
>At3g01450.1 68416.m00069 expressed protein
Length = 326
Score = 25.8 bits (54), Expect = 9.7
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +2
Query: 254 LQSVYKKLTGREVTFEFPEP 313
LQ+VYKK T E E PEP
Sbjct: 270 LQTVYKKTTNVEPKEEHPEP 289
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,456,811
Number of Sequences: 28952
Number of extensions: 134584
Number of successful extensions: 347
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 527724392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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