Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10394
         (574 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24290.2 68417.m03488 expressed protein                             27   6.7  
At4g24290.1 68417.m03487 expressed protein                             27   6.7  
At3g44060.1 68416.m04720 F-box family protein contains F-box dom...    27   6.7  
At1g18990.1 68414.m02362 expressed protein contains Pfam profile...    27   6.7  
At4g08160.1 68417.m01347 glycosyl hydrolase family 10 protein / ...    27   8.9  

>At4g24290.2 68417.m03488 expressed protein
          Length = 606

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 146 VVVSSIGAGVEFRPNDLRVVLCRGGSDD 63
           V + SIG G +    DLR+  C+GGS D
Sbjct: 13  VAIGSIGCGYDLAI-DLRLKYCKGGSKD 39


>At4g24290.1 68417.m03487 expressed protein
          Length = 350

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 146 VVVSSIGAGVEFRPNDLRVVLCRGGSDD 63
           V + SIG G +    DLR+  C+GGS D
Sbjct: 13  VAIGSIGCGYDLAI-DLRLKYCKGGSKD 39


>At3g44060.1 68416.m04720 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 427

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 121 PAPMELTTTISRLPTASCVAKL 186
           P  M+LT  + +LPTASC  K+
Sbjct: 403 PKKMQLTEDLLKLPTASCKLKI 424


>At1g18990.1 68414.m02362 expressed protein contains Pfam profile
           PF04576: Protein of unknown function, DUF593
          Length = 524

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 165 GIVRSETGELKEALDDDNKP 224
           G++R E GE +E LD++ KP
Sbjct: 401 GLLREERGEAEEFLDEETKP 420


>At4g08160.1 68417.m01347 glycosyl hydrolase family 10 protein /
           carbohydrate-binding domain-containing protein  ;
           contains Pfam profiles PF00331: Glycosyl hydrolase
           family 10, PF02018: Carbohydrate binding domain
          Length = 752

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/20 (70%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +3

Query: 324 RVNLFLRSPPPRAK-LLNSL 380
           RV L+L  PPPRA  LLNSL
Sbjct: 154 RVILYLEGPPPRADILLNSL 173


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,873,240
Number of Sequences: 28952
Number of extensions: 204127
Number of successful extensions: 644
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)