Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10385
         (811 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g36100.1 68415.m04433 integral membrane family protein contai...    29   3.7  
At1g47765.1 68414.m05312 F-box family protein contains F-box dom...    29   4.8  
At2g33260.1 68415.m04077 tryptophan/tyrosine permease family pro...    28   6.4  
At4g07452.1 68417.m01144 hypothetical protein                          28   8.4  

>At2g36100.1 68415.m04433 integral membrane family protein contains
           TIGRFAM TIGR01569 : plant integral membrane protein
           TIGR01569; contains Pfam PF04535 : Domain of unknown
           function (DUF588)
          Length = 206

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +3

Query: 525 LQTKRG*CDVASFTYFPVSMILLFSFVAFVLPLSIV 632
           LQ + G  D+ +F YF +++ ++ S++   LP SIV
Sbjct: 81  LQFQAGYDDLPAFQYFVIAVAVVASYLVLSLPFSIV 116


>At1g47765.1 68414.m05312 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 385

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -2

Query: 783 PVPVLRHLSPLLILNFGPVDACHRVLCLMYK 691
           P+P L   + ++ L + PV+  H+V+CL ++
Sbjct: 146 PIPRLSWNNIIVFLGYDPVEGKHKVMCLPFR 176


>At2g33260.1 68415.m04077 tryptophan/tyrosine permease family
           protein contains Pfam profile PF03222:
           Tryptophan/tyrosine permease family
          Length = 436

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = -2

Query: 303 VLCITPLANLISQT*PESTAFFNVATLTPYTLG-FINYILHSKIKITNRFVC-CVLAGAT 130
           V C++ + +++SQ  P    F   A + P   G  I +   + I  TNR +C  +L   T
Sbjct: 112 VACVSGIGSIVSQWFPSMNPFLANA-IFPLVSGILIGFFPFNAIDFTNRGLCFLMLFSIT 170

Query: 129 SMECGGAAMATRSEV 85
           S+   G ++A RS V
Sbjct: 171 SLVAIGLSVA-RSNV 184


>At4g07452.1 68417.m01144 hypothetical protein
          Length = 231

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 8/22 (36%), Positives = 18/22 (81%)
 Frame = -2

Query: 201 INYILHSKIKITNRFVCCVLAG 136
           I+Y+L+ +++I  + +CC++AG
Sbjct: 24  IHYLLYRQLRILKKEICCLVAG 45


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,472,064
Number of Sequences: 28952
Number of extensions: 285150
Number of successful extensions: 712
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1843581600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)