Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30104
         (702 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g21920.1 68414.m02743 MORN (Membrane Occupation and Recogniti...    29   3.9  
At4g37900.1 68417.m05360 glycine-rich protein                          28   5.2  

>At1g21920.1 68414.m02743 MORN (Membrane Occupation and Recognition
           Nexus) repeat-containing protein
           /phosphatidylinositol-4-phosphate 5-kinase-related
           similar to phosphatidylinositol-4-phosphate 5-kinase
           AtPIP5K1 [Arabidopsis thaliana] GI:3702691; contains
           Pfam profile PF02493: MORN repeat
          Length = 417

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -1

Query: 513 RHGGGNCHKGCWRNARGSGCGAGAAWSTSAGCTEAECSSLLRSL 382
           R   G+C++G W   R  G GA +  +  A   E +   L+ SL
Sbjct: 310 RFANGHCYEGAWHEGRKQGFGAYSFRNGDAKSGEWDSGVLVTSL 353


>At4g37900.1 68417.m05360 glycine-rich protein 
          Length = 787

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
 Frame = -1

Query: 507 GGGNCHKG--CWRNARGSGCGAGAAWSTSAGC 418
           GGG C  G  C    +  GCG G+    S GC
Sbjct: 727 GGGGCGGGGRCGGMTKIEGCGGGSCTGGSTGC 758


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,788,443
Number of Sequences: 28952
Number of extensions: 252622
Number of successful extensions: 738
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)