Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30102
         (713 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)             121   4e-28
At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso...   118   5e-27
At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF051...    30   1.8  
At1g67280.1 68414.m07657 lactoylglutathione lyase, putative / gl...    29   3.1  
At1g21740.1 68414.m02721 expressed protein contains Pfam domains...    29   3.1  
At2g40370.1 68415.m04978 laccase, putative / diphenol oxidase, p...    28   7.1  
At2g16390.1 68415.m01876 SNF2 domain-containing protein / helica...    28   7.1  

>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
          Length = 249

 Score =  121 bits (292), Expect = 4e-28
 Identities = 74/151 (49%), Positives = 96/151 (63%), Gaps = 5/151 (3%)
 Frame = +2

Query: 251 KGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPK 424
           +G  C+R   RR GER+RKSVRGCIV  +LSVL LVIV+KG  ++PGLTD   PR  GPK
Sbjct: 79  RGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGVSDLPGLTDTEKPRMRGPK 138

Query: 425 RASKIRKLFNLSKEDDVRRYV--VKRVLPARKEKKMLN-PDIRHLRSRG*SPL*FCSVDV 595
           RASKIRKLFNL KEDDVR+YV   +R    +K KK+   P I+ L     +PL       
Sbjct: 139 RASKIRKLFNLGKEDDVRKYVNTYRRTFTNKKGKKVSKAPKIQRLV----TPLTLQRKRA 194

Query: 596 IVSL*RRSVFAKRKFSEAEYAKLLAQRKRKE 688
            ++  ++ + AK     A+Y KLLA R +++
Sbjct: 195 RIADKKKRI-AKANSDAADYQKLLASRLKEQ 224



 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 42/70 (60%), Positives = 53/70 (75%)
 Frame = +3

Query: 51  CQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNS 230
           CQK  E+ D+ KLR F++KR+  EV  D LG+E+KGYV ++ GG DKQGFPMKQGVLT  
Sbjct: 12  CQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPG 71

Query: 231 RVRLLMSKAT 260
           RVRLL+ + T
Sbjct: 72  RVRLLLHRGT 81


>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
           protein S6, Arabidopsis thaliana, PID:g2662469
          Length = 250

 Score =  118 bits (283), Expect = 5e-27
 Identities = 73/151 (48%), Positives = 95/151 (62%), Gaps = 5/151 (3%)
 Frame = +2

Query: 251 KGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPK 424
           +G  C+R   RR GER+RKSVRGCIV  +LSVL LVIV+KG  ++PGLTD   PR  GPK
Sbjct: 79  RGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPK 138

Query: 425 RASKIRKLFNLSKEDDVRRYV--VKRVLPARKEKKMLN-PDIRHLRSRG*SPL*FCSVDV 595
           RASKIRKLFNL KEDDVR YV   +R    +K K++   P I+ L     +PL       
Sbjct: 139 RASKIRKLFNLKKEDDVRTYVNTYRRKFTNKKGKEVSKAPKIQRLV----TPLTLQRKRA 194

Query: 596 IVSL*RRSVFAKRKFSEAEYAKLLAQRKRKE 688
            ++  ++ + AK     A+Y KLLA R +++
Sbjct: 195 RIADKKKKI-AKANSDAADYQKLLASRLKEQ 224



 Score = 97.5 bits (232), Expect = 8e-21
 Identities = 43/70 (61%), Positives = 53/70 (75%)
 Frame = +3

Query: 51  CQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNS 230
           CQK  E+ D+ KLR FY+KR+  EV  D LG+E+KGYV ++ GG DKQGFPMKQGVLT  
Sbjct: 12  CQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQGFPMKQGVLTPG 71

Query: 231 RVRLLMSKAT 260
           RVRLL+ + T
Sbjct: 72  RVRLLLHRGT 81


>At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF05178:
           Krr1 family
          Length = 638

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/45 (28%), Positives = 28/45 (62%)
 Frame = +2

Query: 386 LTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPARKEK 520
           + +G+V ++   ++A +  K   + KEDDVR+  +KR+   +K++
Sbjct: 288 VVEGSVRKKDNARKAQRKNKDERMKKEDDVRKEELKRLKNVKKKE 332


>At1g67280.1 68414.m07657 lactoylglutathione lyase, putative /
           glyoxalase I, putative similar to putative
           lactoylglutathione lyase SP:Q39366, GI:2494843 from
           [Brassica oleracea]
          Length = 350

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +3

Query: 36  TRQRACQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPM 206
           T +  CQ +  V D  +   FYEK  G E+   +   E+K Y + + G   +  FP+
Sbjct: 215 TPEPLCQVMLRVGDLDRAIKFYEKAFGMELLRTRDNPEYK-YTIAMMGYGPEDKFPV 270


>At1g21740.1 68414.m02721 expressed protein contains Pfam domains,
           PF04782: Protein of unknown function (DUF632) and
           PF04783: Protein of unknown function (DUF630)
          Length = 953

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +3

Query: 54  QKLF-EVVDEHKLRIFYEKRMGAEVEADQLGDE 149
           +KL+ EV DE KLR+ YE++     + D LG E
Sbjct: 602 KKLYKEVKDEEKLRVVYEEKCRTLKKLDSLGAE 634


>At2g40370.1 68415.m04978 laccase, putative / diphenol oxidase,
           putative similar to laccase [Populus balsamifera subsp.
           trichocarpa][GI:3805960]
          Length = 580

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 75  PPLRTTSGMPVAGYETFNFMTAVNP 1
           PPLR T G+PV G+    F+ A NP
Sbjct: 514 PPLRNTVGVPVNGWAVIRFI-ADNP 537


>At2g16390.1 68415.m01876 SNF2 domain-containing protein / helicase
           domain-containing protein low similarity to RAD54
           [Drosophila melanogaster] GI:1765914; contains Pfam
           profiles PF00271: Helicase conserved C-terminal domain,
           PF00176: SNF2 family N-terminal domain
          Length = 888

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 374 EIPGLTDGNVPRRLGPKRASKIRKL 448
           E+PGL D  V   L PK+ ++++KL
Sbjct: 620 ELPGLADFTVVLNLSPKQLNEVKKL 644


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,503,324
Number of Sequences: 28952
Number of extensions: 319160
Number of successful extensions: 888
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)