Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30095
         (848 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi...   144   9e-35
At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi...   135   3e-32
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi...   135   3e-32
At1g29195.1 68414.m03572 expressed protein                             30   1.7  
At4g10750.1 68417.m01755 HpcH/HpaI aldolase family protein simil...    29   3.9  
At1g24145.1 68414.m03046 expressed protein                             29   3.9  

>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
           to ribosomal protein GI:806279 from [Arabidopsis
           thaliana]
          Length = 390

 Score =  144 bits (348), Expect = 9e-35
 Identities = 62/84 (73%), Positives = 75/84 (89%)
 Frame = +2

Query: 2   FYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEA 181
           F P+KR+ RHRGKVKAFPKDDP+KP  LT+F+GYKAGMTH+VR+ ++PGSK++KKE  EA
Sbjct: 16  FLPRKRASRHRGKVKAFPKDDPTKPCRLTSFLGYKAGMTHIVRDVEKPGSKLHKKETCEA 75

Query: 182 VTIIETPPMVCVGVVGYIETPHGL 253
           VTIIETPPMV VGVVGY++TP GL
Sbjct: 76  VTIIETPPMVVVGVVGYVKTPRGL 99



 Score =  136 bits (330), Expect = 1e-32
 Identities = 75/174 (43%), Positives = 104/174 (59%), Gaps = 1/174 (0%)
 Frame = +1

Query: 241 PSWTTALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIR 420
           P    +L TVWA+H+SE+ RRRFYKNW               + E G+K I+   +KM +
Sbjct: 96  PRGLRSLCTVWAQHLSEELRRRFYKNWAKSKKKAFTRYSKKHETEEGKKDIQSQLEKMKK 155

Query: 421 YCSVVRVIAHTQMKLLK-QRQKKAHIMEIQLTVVPSRTK*NGPENIWRNLSLFDSVFAQD 597
           YCSV+RV+AHTQ++ +K  +QKKAH+ EIQ+       K +   +++      D++F +D
Sbjct: 156 YCSVIRVLAHTQIRKMKGLKQKKAHLNEIQINGGDIAKKVDYACSLFEKQVPVDAIFQKD 215

Query: 598 EMIDCIGVTKGQRIQRCHFLVGHTKKLTPVRHTRVFRKVACIGAWHPFLRVSFT 759
           EMID IGVTKG+  +      G T+   P +  R  RKVACIGAWHP  RVS+T
Sbjct: 216 EMIDIIGVTKGKGYEGVVTRWGVTR--LPRKTHRGLRKVACIGAWHP-ARVSYT 266


>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  135 bits (327), Expect = 3e-32
 Identities = 60/84 (71%), Positives = 71/84 (84%)
 Frame = +2

Query: 2   FYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEA 181
           F P+KR+ RHRGKVKAFPKDD +KP   TAF+GYKAGMTH+VRE ++PGSK++KKE  EA
Sbjct: 16  FLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREVEKPGSKLHKKETCEA 75

Query: 182 VTIIETPPMVCVGVVGYIETPHGL 253
           VTIIETP MV VGVV Y++TP GL
Sbjct: 76  VTIIETPAMVVVGVVAYVKTPRGL 99



 Score =  133 bits (321), Expect = 2e-31
 Identities = 74/174 (42%), Positives = 103/174 (59%), Gaps = 1/174 (0%)
 Frame = +1

Query: 241 PSWTTALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIR 420
           P    +L TVWA+H+SE+ RRRFYKNW              +  E G+K I+   +KM +
Sbjct: 96  PRGLRSLNTVWAQHLSEEVRRRFYKNWAKSKKKAFTGYAKQYDSEDGKKGIQAQLEKMKK 155

Query: 421 YCSVVRVIAHTQMKLLK-QRQKKAHIMEIQLTVVPSRTK*NGPENIWRNLSLFDSVFAQD 597
           Y +V+RV+AHTQ++ +K  +QKKAH+MEIQ+       K +   + +      ++VF +D
Sbjct: 156 YATVIRVLAHTQIRKMKGLKQKKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKD 215

Query: 598 EMIDCIGVTKGQRIQRCHFLVGHTKKLTPVRHTRVFRKVACIGAWHPFLRVSFT 759
           EMID IGVTKG+  +      G T+   P +  R  RKVACIGAWHP  RVS+T
Sbjct: 216 EMIDIIGVTKGKGYEGVVTRWGVTR--LPRKTHRGLRKVACIGAWHP-ARVSYT 266


>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  135 bits (327), Expect = 3e-32
 Identities = 60/84 (71%), Positives = 71/84 (84%)
 Frame = +2

Query: 2   FYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEA 181
           F P+KR+ RHRGKVKAFPKDD +KP   TAF+GYKAGMTH+VRE ++PGSK++KKE  EA
Sbjct: 16  FLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREVEKPGSKLHKKETCEA 75

Query: 182 VTIIETPPMVCVGVVGYIETPHGL 253
           VTIIETP MV VGVV Y++TP GL
Sbjct: 76  VTIIETPAMVVVGVVAYVKTPRGL 99



 Score =  133 bits (321), Expect = 2e-31
 Identities = 74/174 (42%), Positives = 103/174 (59%), Gaps = 1/174 (0%)
 Frame = +1

Query: 241 PSWTTALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIR 420
           P    +L TVWA+H+SE+ RRRFYKNW              +  E G+K I+   +KM +
Sbjct: 96  PRGLRSLNTVWAQHLSEEVRRRFYKNWAKSKKKAFTGYAKQYDSEDGKKGIQAQLEKMKK 155

Query: 421 YCSVVRVIAHTQMKLLK-QRQKKAHIMEIQLTVVPSRTK*NGPENIWRNLSLFDSVFAQD 597
           Y +V+RV+AHTQ++ +K  +QKKAH+MEIQ+       K +   + +      ++VF +D
Sbjct: 156 YATVIRVLAHTQIRKMKGLKQKKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKD 215

Query: 598 EMIDCIGVTKGQRIQRCHFLVGHTKKLTPVRHTRVFRKVACIGAWHPFLRVSFT 759
           EMID IGVTKG+  +      G T+   P +  R  RKVACIGAWHP  RVS+T
Sbjct: 216 EMIDIIGVTKGKGYEGVVTRWGVTR--LPRKTHRGLRKVACIGAWHP-ARVSYT 266


>At1g29195.1 68414.m03572 expressed protein
          Length = 193

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +2

Query: 83  LTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPP 205
           +TA    KA   HV+++P  P S  ++++++ A  I+  PP
Sbjct: 37  ITASEIMKAHPKHVLKKPSSPTSDHDERDVISATKIVIVPP 77


>At4g10750.1 68417.m01755 HpcH/HpaI aldolase family protein similar
           to 2,4-dihydroxydec-2-ene-1,10-dioic acid aldolase
           [Sphingopyxis macrogoltabida] GI:23330203; contains Pfam
           profile PF03328: HpcH/HpaI aldolase family
          Length = 358

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = -2

Query: 232 VSNNTDTNHRRSLDDGDSLHDLFLVDF*TGTVRFSNHVGHTGLITD 95
           ++N + T+ +  L  G++L+ LFL+ F       + H G+  ++ D
Sbjct: 72  ITNRSKTSLKSRLRGGETLYGLFLLSFSPTLAEIAAHAGYDYVVVD 117


>At1g24145.1 68414.m03046 expressed protein 
          Length = 128

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 309 EATSTVFRHMLRPDSQKSGSP 247
           E + T++ H LRPD  K GSP
Sbjct: 77  EPSKTIYGHQLRPDQIKRGSP 97


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,411,306
Number of Sequences: 28952
Number of extensions: 461882
Number of successful extensions: 1193
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)