Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30092
(661 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g25480.1 68414.m03164 expressed protein contains Pfam profile... 33 0.22
At1g68600.1 68414.m07839 expressed protein contains Pfam profile... 29 2.7
At2g17470.1 68415.m02017 expressed protein contains Pfam profile... 29 3.6
At1g51060.1 68414.m05740 histone H2A, putative similar to histon... 29 3.6
At1g66450.1 68414.m07549 DC1 domain-containing protein contains ... 28 6.3
At3g07580.1 68416.m00908 expressed protein 27 8.4
At1g59750.2 68414.m06728 auxin-responsive factor (ARF1) identica... 27 8.4
At1g59750.1 68414.m06727 auxin-responsive factor (ARF1) identica... 27 8.4
At1g56610.1 68414.m06511 syntaxin-related family protein similar... 27 8.4
>At1g25480.1 68414.m03164 expressed protein contains Pfam profile
PF01027: Uncharacterized protein family UPF0005
Length = 548
Score = 32.7 bits (71), Expect = 0.22
Identities = 23/68 (33%), Positives = 38/68 (55%)
Frame = +1
Query: 97 KLKIQ*YLTTMSMITGTLNQYIQCVERMYRTGQGNILSRLLSLRDEHVYNRNLYRAILQP 276
KL ++ + + + + G +N Y+QCVE Y IL+ S D+ +Y+ YR+++Q
Sbjct: 235 KLVVKNFKSVANSLEGCVNGYLQCVE--YERIPSKILTYQAS--DDPLYSG--YRSVVQS 288
Query: 277 LSQEIVLL 300
SQE LL
Sbjct: 289 TSQEDSLL 296
>At1g68600.1 68414.m07839 expressed protein contains Pfam profile
PF01027: Uncharacterized protein family UPF0005
Length = 537
Score = 29.1 bits (62), Expect = 2.7
Identities = 23/68 (33%), Positives = 35/68 (51%)
Frame = +1
Query: 97 KLKIQ*YLTTMSMITGTLNQYIQCVERMYRTGQGNILSRLLSLRDEHVYNRNLYRAILQP 276
KL + + + + G +N Y+QCVE Y IL+ S D+ +Y+ YR+ +Q
Sbjct: 224 KLVAKNFKNVANSLEGCVNGYLQCVE--YERIPSKILTYQAS--DDPLYSG--YRSAVQS 277
Query: 277 LSQEIVLL 300
SQE LL
Sbjct: 278 TSQEDSLL 285
>At2g17470.1 68415.m02017 expressed protein contains Pfam profile
PF01027: Uncharacterized protein family UPF0005
Length = 538
Score = 28.7 bits (61), Expect = 3.6
Identities = 22/68 (32%), Positives = 35/68 (51%)
Frame = +1
Query: 97 KLKIQ*YLTTMSMITGTLNQYIQCVERMYRTGQGNILSRLLSLRDEHVYNRNLYRAILQP 276
KL + + + + G +N Y+QCVE Y IL+ S D+ +Y+ YR+ +Q
Sbjct: 207 KLVANNFKSVANSLEGCVNGYLQCVE--YERVPSKILTYQTS--DDPLYSG--YRSAIQS 260
Query: 277 LSQEIVLL 300
+QE LL
Sbjct: 261 TNQEESLL 268
>At1g51060.1 68414.m05740 histone H2A, putative similar to histone
H2A GI:7595337 from Arabidopsis thaliana, Triticum
aestivum GI:536892, Picea abies SP|P35063; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 132
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = -1
Query: 328 KCAITSSSNGATQFPVTRVAISLDKDSYCRHV 233
K A T SS QFPV R+A L K Y V
Sbjct: 14 KKATTRSSKAGLQFPVGRIARFLKKGKYAERV 45
>At1g66450.1 68414.m07549 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 700
Score = 27.9 bits (59), Expect = 6.3
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +3
Query: 345 LYASDYIEAYDPSEYMCGCCRKAINRD 425
L+ +I ++D ++ CG CR+ I D
Sbjct: 320 LHRISFIRSFDQGDWSCGVCRRKIYND 346
>At3g07580.1 68416.m00908 expressed protein
Length = 116
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +3
Query: 345 LYASDYIEAYDPSEYMCGCCRKAINRDRKKRNWCLPV-MYDCMVLD 479
LY++D+ + P + C RKA RK W + YD +D
Sbjct: 19 LYSTDFATPFLPFDVASPCHRKASGNRRKSGGWAAEMHQYDDPTVD 64
>At1g59750.2 68414.m06728 auxin-responsive factor (ARF1) identical
to auxin response factor 1 GI:2245378 from [Arabidopsis
thaliana]
Length = 662
Score = 27.5 bits (58), Expect = 8.4
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +1
Query: 478 ILRTCWHRKTGTMLALPKMGSKIYW 552
+ R WH G ++ LP+ G ++Y+
Sbjct: 19 LCRELWHACAGPLVTLPREGERVYY 43
>At1g59750.1 68414.m06727 auxin-responsive factor (ARF1) identical
to auxin response factor 1 GI:2245378 from [Arabidopsis
thaliana]
Length = 665
Score = 27.5 bits (58), Expect = 8.4
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +1
Query: 478 ILRTCWHRKTGTMLALPKMGSKIYW 552
+ R WH G ++ LP+ G ++Y+
Sbjct: 19 LCRELWHACAGPLVTLPREGERVYY 43
>At1g56610.1 68414.m06511 syntaxin-related family protein similar to
proteins At3g54160, At1g47920 (syntaxin SYP81),
At5g41830, At3g44180, At3g58890, At1g48390, At3g59270
[Arabidopsis thaliana]; contains a novel domain similar
to F-box that is shared among other proteins in
Arabidopsis
Length = 535
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Frame = +3
Query: 306 DELVIAHLSCLKALYASDYIEAYDPSEYM-----CGCCRKAINRDRKKRNW 443
D++ AHL CLK L+ D + A D ++ C + + D K NW
Sbjct: 217 DDVAAAHLPCLKTLWLDDVLVA-DVKVFVRLLSRCPILEELVMIDMKWHNW 266
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,423,559
Number of Sequences: 28952
Number of extensions: 348222
Number of successful extensions: 812
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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