Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30091
         (864 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g22550.1 68417.m03255 phosphatidic acid phosphatase-related /...    33   0.25 
At5g57260.1 68418.m07152 cytochrome P450 71B10 identical to cyto...    29   4.0  

>At4g22550.1 68417.m03255 phosphatidic acid phosphatase-related /
           PAP2-related contains Pfam profile PF01569: PAP2
           superfamily
          Length = 213

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 25/94 (26%)
 Frame = +1

Query: 58  VGPDKFSFPSGHASRAVLISFILIYFDS-------------------------VSIIFYP 162
           V  D +SFPSGHASR   ++  + +F +                         V +    
Sbjct: 103 VSADHYSFPSGHASRVFFVAASVHFFSAAAEASMTGPSYSFLDGWIRDHNDGDVKVEVVV 162

Query: 163 PLMAWVVSVSISRVLAERHYLLDSIGGVGIGFLK 264
            +  W    +ISR+L  RHY+LD   G  +G ++
Sbjct: 163 VVWIWATVTAISRILLGRHYVLDVAAGAFLGIVE 196


>At5g57260.1 68418.m07152 cytochrome P450 71B10 identical to
           cytochrome P450 71B10 (SP:Q9LVD2) [Arabidopsis thaliana]
          Length = 1483

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 377 CIKHLESLNDSNMLNIN*YYFKIVKYXFMNMTR 475
           CI    S  DS  +NIN   + IV + F+N+ R
Sbjct: 556 CILQFYSQLDSKQININHRIYSIVSWAFLNLNR 588


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,200,636
Number of Sequences: 28952
Number of extensions: 274155
Number of successful extensions: 527
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2019160800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)