Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30088
         (622 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g30410.1 68415.m03704 tubulin folding cofactor A (KIESEL) ide...    53   1e-07
At1g20110.1 68414.m02516 zinc finger (FYVE type) family protein ...    28   5.7  
At1g66860.1 68414.m07599 expressed protein similar to Hypothetic...    27   7.6  
At1g53280.1 68414.m06038 DJ-1 family protein similar to DJ-1 pro...    27   7.6  

>At2g30410.1 68415.m03704 tubulin folding cofactor A (KIESEL)
           identical to cDNA tubulin folding cofactor A,
           GI:20514256, SP|O04350 Tubulin-specific chaperone A
           (Tubulin-folding cofactor A) (CFA) (TCP1-chaperonin
           cofactor A homolog) {Arabidopsis thaliana}
          Length = 113

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 25/69 (36%), Positives = 39/69 (56%)
 Frame = +3

Query: 51  CERIXXXXXXXXXXXXLQKNRIQRIKDEGQDEHNIRKQEEVLQEYLMMVPDCQRRLIKAY 230
           C+RI             +  +   +KD+G D +++++QE VL E  MM+PDC +RL  A 
Sbjct: 14  CKRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQENVLGESRMMIPDCHKRLESAL 73

Query: 231 TDLKTTLEQ 257
            DLK+TL +
Sbjct: 74  ADLKSTLAE 82


>At1g20110.1 68414.m02516 zinc finger (FYVE type) family protein
           contains Pfam profile: PF01363 FYVE zinc finger
          Length = 601

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 12/66 (18%)
 Frame = +3

Query: 426 NKYAFLNVPPPPPT------STQKSFITTNVHPD-TSKHKF-----RHQQGPTIDGPRRI 569
           N Y+  N PPPPPT      S+  SF +T  +   TS+H +     +HQ       P   
Sbjct: 106 NSYSTFNQPPPPPTIHPQPLSSYGSFDSTAPYQQPTSQHMYYSPYDQHQTSGYSSAPPPS 165

Query: 570 KIRAPN 587
              APN
Sbjct: 166 SAPAPN 171


>At1g66860.1 68414.m07599 expressed protein similar to Hypothetical
           protein RP404. (Swiss-Prot:Q9ZDC7) [Rickettsia
           prowazekii]; similar to Hypothetical protein yvdE
           homolog (Fragment) (Swiss-Prot:P22347) [Lactococcus
           lactis]
          Length = 433

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = +3

Query: 117 QRIKDEGQDEHNIRKQEEVLQEYLMMVPDCQRRLIKAYTDLKTTLEQNRTSKNTRNTL 290
           +R++  G DE +        QE+   V  CQ++ + ++  +   LE N   +N R  L
Sbjct: 257 ERMRKNGSDEFDFPGCPVAYQEFAKAVIACQKK-VNSFLSVPKKLELNPEMENKRKIL 313


>At1g53280.1 68414.m06038 DJ-1 family protein similar to DJ-1
           protein [Homo sapiens] GI:1780755; similar to DJ-1 beta
           (GI:18642508) [Drosophila melanogaster]; contains Pfam
           profile: PF01965 ThiJ/PfpI family; TIGRFAM TIGR01383:
           DJ-1 family protein
          Length = 438

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +1

Query: 451 LHHRQPQHKSRSSRQMCTQIQASTSFATSKDLPSTGHGGSRFE 579
           LHH  P+  S    +    I A+ S +T K L    HG   FE
Sbjct: 25  LHHYSPRRISLRVNRRSFSISATMSSSTKKVLIPVAHGTEPFE 67


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,557,460
Number of Sequences: 28952
Number of extensions: 249909
Number of successful extensions: 1080
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)