Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30087
         (823 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) riboso...   259   1e-69
At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)             259   2e-69
At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contai...   259   2e-69
At4g10710.1 68417.m01751 transcriptional regulator-related simil...    31   0.92 
At1g29760.1 68414.m03639 expressed protein                             31   0.92 
At2g42160.1 68415.m05218 zinc finger (ubiquitin-hydrolase) domai...    29   3.7  
At2g38050.1 68415.m04671 3-oxo-5-alpha-steroid 4-dehydrogenase, ...    29   3.7  

>At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) ribosomal
           protein S4, Arabidopsis thaliana, PIR:T48480
          Length = 262

 Score =  259 bits (635), Expect = 1e-69
 Identities = 118/175 (67%), Positives = 140/175 (80%)
 Frame = +1

Query: 1   KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 180
           KHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT  EV+ I+ 
Sbjct: 7   KHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILM 66

Query: 181 QRLIKVDGKVRTEPTYPTGFMRCCLIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 360
           QR I+VDGKVRT+ TYP GFM    I KTNE FRL+YD KGRF +H I  EEAK+KLCKV
Sbjct: 67  QRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKV 126

Query: 361 KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFGLGTCV 525
           + +  G K +PYL T+DGRTIRYPDPLIK ND+I+LD+   KI++FIKF +G  V
Sbjct: 127 RSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNVV 181



 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 32/56 (57%), Positives = 39/56 (69%)
 Frame = +3

Query: 513 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTSPRG*TTCS*IGKGTK 680
           GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH           IGKGTK
Sbjct: 178 GNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTK 233


>At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)
          Length = 262

 Score =  259 bits (634), Expect = 2e-69
 Identities = 118/175 (67%), Positives = 140/175 (80%)
 Frame = +1

Query: 1   KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 180
           KHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT  EV+ I+ 
Sbjct: 7   KHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILM 66

Query: 181 QRLIKVDGKVRTEPTYPTGFMRCCLIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 360
           QR I+VDGKVRT+ TYP GFM    I KTNE FRL+YD KGRF +H I  EEAK+KLCKV
Sbjct: 67  QRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKV 126

Query: 361 KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFGLGTCV 525
           + +  G K +PYL T+DGRTIRYPDPLIK ND+I+LD+   KI++FIKF +G  V
Sbjct: 127 RSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVV 181



 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 32/56 (57%), Positives = 39/56 (69%)
 Frame = +3

Query: 513 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTSPRG*TTCS*IGKGTK 680
           GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH           IGKGTK
Sbjct: 178 GNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTK 233


>At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contains
           ribosomal protein S4 signature from residues 8 to 22
          Length = 261

 Score =  259 bits (634), Expect = 2e-69
 Identities = 118/175 (67%), Positives = 140/175 (80%)
 Frame = +1

Query: 1   KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 180
           KHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT  EV+ I+ 
Sbjct: 7   KHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILM 66

Query: 181 QRLIKVDGKVRTEPTYPTGFMRCCLIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 360
           QR I+VDGKVRT+ TYP GFM    I KTNE FRL+YD KGRF +H I  EEAK+KLCKV
Sbjct: 67  QRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKV 126

Query: 361 KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFGLGTCV 525
           + +  G K +PYL T+DGRTIRYPDPLIK ND+I+LD+   KI++FIKF +G  V
Sbjct: 127 RSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVV 181



 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 32/56 (57%), Positives = 39/56 (69%)
 Frame = +3

Query: 513 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTSPRG*TTCS*IGKGTK 680
           GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH           IGKGTK
Sbjct: 178 GNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTK 233


>At4g10710.1 68417.m01751 transcriptional regulator-related similar
           to chromatin-specific transcription elongation factor
           FACT 140 kDa subunit (GI:5499741) [Homo sapiens]
          Length = 1074

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 107 KHSRNLWGPVDGLGAYTPPSLSNIHAL 27
           KHS +LWG  D L   TPP+  ++  L
Sbjct: 44  KHSADLWGSADALAIATPPASDDLRYL 70


>At1g29760.1 68414.m03639 expressed protein
          Length = 526

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 218 SVLTFPSTFMRRCFTIFRTSFPVKAYFRRFL 126
           S+LTFP   +R CF  F   F    + RRFL
Sbjct: 195 SLLTFPPWLLRNCFLFFFDPFSTIRFGRRFL 225


>At2g42160.1 68415.m05218 zinc finger (ubiquitin-hydrolase)
           domain-containing protein similar to BRCA1-associated
           protein 2 [Homo sapiens] GI:3252872; contains Pfam
           profile PF02148: Zn-finger in ubiquitin-hydrolases and
           other protein
          Length = 488

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 527 HTQVPRPNLMKSIIFVVAMSNWMESLTLI 441
           H+ +P P+   + +F+VA+ N++ SL  I
Sbjct: 59  HSSLPNPSSRSTTLFIVAVPNYLSSLDFI 87


>At2g38050.1 68415.m04671 3-oxo-5-alpha-steroid 4-dehydrogenase,
           putative / steroid 5-alpha-reductase, putative identical
           to gi:1280611; contains a steroid 5-alpha reductase,
           C-terminal domain
          Length = 262

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -3

Query: 197 TFMRRCFTIFRTSFPVKAYFRRFLRKITRGKHSRNLWGP 81
           TF R C      + P  A   +FL+    GKH+R  WGP
Sbjct: 8   TFFRYCLLTLIFAGPPTAVLLKFLQA-PYGKHNRTGWGP 45


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,325,951
Number of Sequences: 28952
Number of extensions: 471612
Number of successful extensions: 1401
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1398
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1882599200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)