Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30086
         (825 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g57720.1 68414.m06549 elongation factor 1B-gamma, putative / ...    48   1e-05
At1g09640.1 68414.m01081 elongation factor 1B-gamma, putative / ...    48   1e-05
At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Ac...    30   1.6  
At5g24280.1 68418.m02856 expressed protein ; expression supporte...    29   2.8  
At5g15630.1 68418.m01829 phytochelatin synthetase family protein...    29   3.7  
At2g19790.1 68415.m02312 clathrin adaptor complex small chain fa...    28   6.5  
At1g08060.2 68414.m00881 MOM1 identical to MOM1 (mutation in a '...    28   6.5  
At1g08060.1 68414.m00880 MOM1 identical to MOM1 (mutation in a '...    28   6.5  
At3g29410.1 68416.m03695 terpene synthase/cyclase family protein...    28   8.7  
At1g32190.1 68414.m03959 expressed protein                             28   8.7  

>At1g57720.1 68414.m06549 elongation factor 1B-gamma, putative /
           eEF-1B gamma, putative similar to elongation factor 1B
           gamma GI:3868758 from [Oryza sativa]
          Length = 413

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 27/101 (26%), Positives = 46/101 (45%)
 Frame = +1

Query: 205 FMSCNLYYGYVPEVRQKRKQAFASVCLFGEDNNSTISGVWVWRGKELVFPLSSDWQVDYE 384
           F++ N   G++  +   RK +F  + + G +    + G+W++RG E+      D   D E
Sbjct: 315 FVTLNKVGGFLQRMDLARKYSFGKMLICGSEGPFKVKGLWLFRGPEIP-KFIMDEVYDME 373

Query: 385 SYDWKKLDPSSEETKKLVQDYFSWNGTDKDGRKFNQGKIFK 507
            Y+W K+D S E  K+ V      +    +G      K FK
Sbjct: 374 LYEWTKVDISDEAQKERVSQMIE-DAEPFEGEALLDAKCFK 413


>At1g09640.1 68414.m01081 elongation factor 1B-gamma, putative /
           eEF-1B gamma, putative Similar to elongation factor
           1-gamma (gb|EF1G_XENLA). ESTs
           gb|T20564,gb|T45940,gb|T04527 come from this gene
          Length = 414

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 27/101 (26%), Positives = 46/101 (45%)
 Frame = +1

Query: 205 FMSCNLYYGYVPEVRQKRKQAFASVCLFGEDNNSTISGVWVWRGKELVFPLSSDWQVDYE 384
           F++ N   G++  +   RK +F  + + G +    + G+W++RG E+      D   D E
Sbjct: 316 FVTLNKVGGFLQRMDLARKYSFGKMLICGSEGPFKVKGLWLFRGPEIP-KFIMDEVYDME 374

Query: 385 SYDWKKLDPSSEETKKLVQDYFSWNGTDKDGRKFNQGKIFK 507
            Y+W K+D S E  K+ V      +    +G      K FK
Sbjct: 375 LYEWTKVDISDEAQKERVSQMIE-DAEPFEGEALLDAKCFK 414


>At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Actin
           11 {Arabidopsis thaliana}; contains Pfam profile
           PF00022: Actin
          Length = 366

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 218 TFITGMFQRLDKSANRLSHPSACLVKTTIPPSPEC 322
           T + G+ +R+ K  N L  PS+  VK  +PP  EC
Sbjct: 295 TMLHGIKERMTKELNALV-PSSMKVKVVVPPESEC 328


>At5g24280.1 68418.m02856 expressed protein ; expression supported by
            MPSS
          Length = 1634

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 645  IKTSVINDFQSPCIHKCSAENDAALHEKMITLAFI 749
            + TS+ +D +S C H  S E+D++  E  I  AF+
Sbjct: 1155 LDTSIHHDEKSGCFHTMSIESDSSSVESAIRYAFV 1189


>At5g15630.1 68418.m01829 phytochelatin synthetase family protein /
           COBRA cell expansion protein COBL4 similar to
           phytochelatin synthetase [Hordeum vulgare subsp.
           vulgare] GI:29570314; identified in Roudier, et al,
           Plant Phys. (2002) 130:538-548 (PMID:12376623); contains
           Pfam profile PF04833: Phytochelatin synthetase-like
           conserved region
          Length = 431

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 6/32 (18%)
 Frame = +2

Query: 272 HPSACL-----VKTTIPPSPECGCGAE-RSSC 349
           HPS C+        TI P P C CG E + SC
Sbjct: 214 HPSCCVSFSSFYNDTITPCPSCACGCENKKSC 245


>At2g19790.1 68415.m02312 clathrin adaptor complex small chain
           family protein contains Pfam profile: PF01217 clathrin
           adaptor complex small chain
          Length = 143

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +1

Query: 445 YFSWNGTDKDGRKFNQGKIFK*C-RQTSSQCIHISYNNYKKLYKKETFKCK*VDVGNFRN 621
           Y+ W   ++  R+  +G+I + C  +   QC  + + NYK +Y++       V V +  N
Sbjct: 20  YYEWLTLEE--RRALEGEIVRKCLARNDQQCSFVEHRNYKIVYRRYASLFFMVGVDDDEN 77

Query: 622 CPQFIEFL 645
               +EF+
Sbjct: 78  ELAILEFI 85


>At1g08060.2 68414.m00881 MOM1 identical to MOM1 (mutation in a
           'Morpheus molecule') [Arabidopsis thaliana]
           gi|8132770|gb|AAF73381.1|
          Length = 2001

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +2

Query: 440 RTTSRGTEPTKTVESSTRARYSSNADKRPANVYTFHTITIKNFTKKKHSNVNR 598
           R +SRGT  TK +  ++  R S      PA+V       +KN T       NR
Sbjct: 35  RRSSRGTPSTKVITPASATRKSERLAPSPASVSKKSGGIVKNSTPSSLRRSNR 87


>At1g08060.1 68414.m00880 MOM1 identical to MOM1 (mutation in a
           'Morpheus molecule') [Arabidopsis thaliana]
           gi|8132770|gb|AAF73381.1|
          Length = 2001

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +2

Query: 440 RTTSRGTEPTKTVESSTRARYSSNADKRPANVYTFHTITIKNFTKKKHSNVNR 598
           R +SRGT  TK +  ++  R S      PA+V       +KN T       NR
Sbjct: 35  RRSSRGTPSTKVITPASATRKSERLAPSPASVSKKSGGIVKNSTPSSLRRSNR 87


>At3g29410.1 68416.m03695 terpene synthase/cyclase family protein
           similar to terpene synthase GB:CAA72074 from
           [Arabidopsis thaliana], contains Pfam profile: PF01397
           terpene synthase family
          Length = 603

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 221 RLQLMNTFSRVSSGVIWYSGIPKW 150
           RLQL  T   + S +IWY GI KW
Sbjct: 416 RLQL--TIDEIKSLMIWYLGIAKW 437


>At1g32190.1 68414.m03959 expressed protein
          Length = 422

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
 Frame = +2

Query: 266 LSHPSACLVKTTIP-PSPECGCGAERSSCSRC 358
           L  PS    K   P PS  CGCG     C +C
Sbjct: 300 LCRPSCSCPKPRCPKPSCSCGCGCGDCGCFKC 331


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,728,695
Number of Sequences: 28952
Number of extensions: 464389
Number of successful extensions: 1179
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1892353600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)