Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30085
(848 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g15140.1 68418.m01774 aldose 1-epimerase family protein simil... 31 1.3
At1g52970.1 68414.m05992 hypothetical protein 29 5.2
At1g52950.1 68414.m05988 replication protein-related low similar... 29 5.2
At1g49920.1 68414.m05598 zinc finger protein-related weak simila... 29 5.2
At1g05170.1 68414.m00520 galactosyltransferase family protein 29 5.2
At5g13640.1 68418.m01582 lecithin:cholesterol acyltransferase fa... 28 6.8
At5g08450.2 68418.m00996 expressed protein KED, Nicotiana tabacu... 28 6.8
At5g08450.1 68418.m00995 expressed protein KED, Nicotiana tabacu... 28 6.8
At1g26760.1 68414.m03258 SET domain-containing protein contains ... 28 6.8
At2g01100.3 68415.m00018 expressed protein 28 9.0
At2g01100.2 68415.m00017 expressed protein 28 9.0
At2g01100.1 68415.m00016 expressed protein 28 9.0
At1g65110.1 68414.m07381 ubiquitin carboxyl-terminal hydrolase-r... 28 9.0
At1g29820.1 68414.m03645 expressed protein 28 9.0
>At5g15140.1 68418.m01774 aldose 1-epimerase family protein similar
to SP|P05149 Aldose 1-epimerase precursor (EC 5.1.3.3)
(Mutarotase) from Acinetobacter calcoaceticus; contains
Pfam profile PF01263 Aldose 1-epimerase
Length = 490
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +1
Query: 331 KNNDYEPVTPKSESQLESDNEDRRTHLSKRK--HLDSDDSDE 450
K+++ + V K + D++D + H K+K H D DDSD+
Sbjct: 91 KDDEKKHVDKKKSGGHDKDDDDEKKHKDKKKDGHNDDDDSDD 132
>At1g52970.1 68414.m05992 hypothetical protein
Length = 149
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = +2
Query: 554 LGPEEEADPPRDETAHYHPHAAFD---ENSSNISTSRIK 661
+G EEE P E+ Y P AA++ E S+++T RIK
Sbjct: 21 IGQEEEISPISPESLAYEPAAAYEYDHELLSHMTTRRIK 59
>At1g52950.1 68414.m05988 replication protein-related low similarity
to replication protein A1 GI:2258469 from (Oryza sativa)
Length = 566
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +1
Query: 292 LDLNSVVNIISPCKNNDYEPVTPKSESQLESDNEDR--RTHLSKRKHLDSDDSDETYT 459
L +N VN + + + V + + + DN RT LSKRK + D SD++ T
Sbjct: 438 LPINDSVNPVDHSSISSNDQVLMLTNNSEKEDNSQTLSRTPLSKRKEIVDDGSDQSST 495
>At1g49920.1 68414.m05598 zinc finger protein-related weak
similarity to mudrA [Zea mays] GI:540581, MURAZC [Zea
mays] GI:1857256; contains Pfam profiles PF03108: MuDR
family transposase, PF04434: SWIM zinc finger
Length = 785
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -3
Query: 792 VC*ISFPS-QIIAQLFQPGSSLEFPWSILDLLESFHYSCLSTLCTLILEV 646
+C IS P I+A + +PGS + PW ++H CL LC+ + V
Sbjct: 442 ICLISSPDPDILAVINEPGSQWKEPW-------AYHRFCLYHLCSKLCSV 484
>At1g05170.1 68414.m00520 galactosyltransferase family protein
Length = 404
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -2
Query: 610 WMIVCCLVSWGVGLFFWSQPVAIPQVQG 527
W I+ CL S+ VG+FF ++ IP+ +G
Sbjct: 19 WTILLCLGSFCVGMFFTNRMWNIPESKG 46
>At5g13640.1 68418.m01582 lecithin:cholesterol acyltransferase
family protein / LACT family protein similar to
SP|P40345 Phospholipid:diacylglycerol acyltransferase
(EC 2.3.1.158) (PDAT) {Saccharomyces cerevisiae};
contains Pfam profile PF02450: Lecithin:cholesterol
acyltransferase (phosphatidylcholine-sterol
acyltransferase)
Length = 671
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -2
Query: 625 IKCCMWMIVCCLVSWGVGLFFW-SQPVAIPQ 536
I C W I C V+W LF + + P + PQ
Sbjct: 51 IDSCCWFIGCVCVTWWFLLFLYNAMPASFPQ 81
>At5g08450.2 68418.m00996 expressed protein KED, Nicotiana tabacum,
EMBL:AB009883
Length = 918
Score = 28.3 bits (60), Expect = 6.8
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +1
Query: 331 KNNDYEPVTPKSESQLESDN--EDRRTHLSKRKHLDSDDSDETYTPFAEQTSRXL*KE 498
K ++ E V P+ + Q E DN +D R KR+ D D E AE+ SR KE
Sbjct: 450 KPSEQEYVAPEQKKQNEPDNCEKDERETKEKRRERDGDSEAER----AEKRSRISEKE 503
>At5g08450.1 68418.m00995 expressed protein KED, Nicotiana tabacum,
EMBL:AB009883
Length = 918
Score = 28.3 bits (60), Expect = 6.8
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +1
Query: 331 KNNDYEPVTPKSESQLESDN--EDRRTHLSKRKHLDSDDSDETYTPFAEQTSRXL*KE 498
K ++ E V P+ + Q E DN +D R KR+ D D E AE+ SR KE
Sbjct: 450 KPSEQEYVAPEQKKQNEPDNCEKDERETKEKRRERDGDSEAER----AEKRSRISEKE 503
>At1g26760.1 68414.m03258 SET domain-containing protein contains
Pfam profiles PF00856: SET domain, PF00515:
tetratricopeptide repeat (TPR) domain
Length = 967
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 131 ERGLSIDVGIRTPSWPADAISTPEVLSYVEQLEK 232
+RGL D+G+ SW ++ I +P V ++ E+
Sbjct: 65 KRGLVFDLGVSKDSWHSEEIGSPVVKRFLSDNEE 98
>At2g01100.3 68415.m00018 expressed protein
Length = 247
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +1
Query: 361 KSESQLESDNEDRRTHLSKRKHL--DSDDSD 447
+S+S E + RR+H R+H DSDDSD
Sbjct: 64 ESDSSSEVRRKSRRSHNKHRRHAHSDSDDSD 94
>At2g01100.2 68415.m00017 expressed protein
Length = 247
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +1
Query: 361 KSESQLESDNEDRRTHLSKRKHL--DSDDSD 447
+S+S E + RR+H R+H DSDDSD
Sbjct: 64 ESDSSSEVRRKSRRSHNKHRRHAHSDSDDSD 94
>At2g01100.1 68415.m00016 expressed protein
Length = 247
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +1
Query: 361 KSESQLESDNEDRRTHLSKRKHL--DSDDSD 447
+S+S E + RR+H R+H DSDDSD
Sbjct: 64 ESDSSSEVRRKSRRSHNKHRRHAHSDSDDSD 94
>At1g65110.1 68414.m07381 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1094
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 361 KSESQLESDNEDRRTHLSKRKHLDSDDSDET 453
KS + + ++RT SK HLD DD E+
Sbjct: 688 KSGPKKKKHRSNKRTSASKSSHLDQDDPQES 718
>At1g29820.1 68414.m03645 expressed protein
Length = 540
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 651 QESKYRELRDKNNGSFPKDPEWT 719
QESK ++L KN+ PK WT
Sbjct: 12 QESKSKKLESKNHSGVPKSDLWT 34
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,093,730
Number of Sequences: 28952
Number of extensions: 380604
Number of successful extensions: 1340
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1335
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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