Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30083
         (851 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57600.1 68418.m07196 expressed protein                             33   0.32 
At2g15420.1 68415.m01764 myosin heavy chain-related                    30   1.7  
At5g36230.1 68418.m04371 eIF4-gamma/eIF5/eIF2-epsilon domain-con...    29   3.0  
At1g71460.1 68414.m08257 pentatricopeptide (PPR) repeat-containi...    29   5.2  
At3g20620.1 68416.m02609 F-box family protein-related contains w...    28   6.9  
At1g21740.1 68414.m02721 expressed protein contains Pfam domains...    28   6.9  
At1g65220.1 68414.m07394 eIF4-gamma/eIF5/eIF2-epsilon domain-con...    28   9.1  

>At5g57600.1 68418.m07196 expressed protein
          Length = 287

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 22/73 (30%), Positives = 31/73 (42%)
 Frame = +1

Query: 190 KCKEENCEVGVVLERNSLIVLSLTRPSSASAGGIGTIPSSAGKSHRYASASCVRGRSTLL 369
           KC +E  E GV  E++ L+ L  T    AS G  GT+     +  R        GR   +
Sbjct: 188 KCLKEEMECGVKSEKSDLLCLVETAGGVASPGPSGTLQCDLYRPFRLPGILVGDGRLGGI 247

Query: 370 PYILLKYSKLRLR 408
              +  Y  L+LR
Sbjct: 248 SGTIAAYESLKLR 260


>At2g15420.1 68415.m01764 myosin heavy chain-related
          Length = 957

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +1

Query: 202 ENCEVGVVLERNSLIVLSLTRPSSASAGGIGTIPSSAGKSHRYASASCVRGRSTLL 369
           EN  +G ++  N    L ++   + + G +GT P S  +  R    S VRGR  +L
Sbjct: 317 ENGGLGRLMMENGFDNLVVSGRDTGARGAVGTRPVSRIEERRTGDCSAVRGRQIVL 372


>At5g36230.1 68418.m04371 eIF4-gamma/eIF5/eIF2-epsilon
           domain-containing protein low similarity to SP|Q13144
           Translation initiation factor eIF-2B epsilon subunit
           (eIF-2B GDP-GTP exchange factor) {Homo sapiens};
           contains Pfam profile PF02020:
           eIF4-gamma/eIF5/eIF2-epsilon
          Length = 411

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 292 GTIPSSAGKSHRYASASCVRGRSTLLPYILLKYSKLRLRRNRILL 426
           GT+ S  G+ H Y+   C   R  +LP ++  Y +  LRR   L+
Sbjct: 79  GTVKSDEGERHTYSVIDCEPKREAILPSVV--YIQKILRRKPFLI 121


>At1g71460.1 68414.m08257 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 689

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 193 CKEENCEVGVVLERNSLIVLSLTRPSSASAGGIGTIPS 306
           C  ENC++   +E   L++LS  RP S + G + T+ S
Sbjct: 493 CYVENCDLRAGIEVFRLMLLSKHRPDSVTMGRVLTVCS 530


>At3g20620.1 68416.m02609 F-box family protein-related contains weak
           hit to TIGRFAM TIGR01640 : F-box protein interaction
           domain; similar to F-box protein family, AtFBX8
           (GI:20197464) [Arabidopsis thaliana]
          Length = 391

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 45  QIVNAGKRGSLAVCAKTRVKLALSSIGSKTCVVSAL 152
           Q+  +GK  SL VC      + L S+ +K C +S L
Sbjct: 43  QLAESGKNSSLVVCPSMGKTMKLYSMDAKRCKLSLL 78


>At1g21740.1 68414.m02721 expressed protein contains Pfam domains,
           PF04782: Protein of unknown function (DUF632) and
           PF04783: Protein of unknown function (DUF630)
          Length = 953

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +1

Query: 208 CEVGVVLER--NSLIVLSLTRPSSASAGGIGTIPSSAGKSHRYASAS 342
           C+VG  ++R  +  +VL  T  SS+    + T+PS  GK H++  +S
Sbjct: 46  CDVGDSIKRFVDEELVLVGTSSSSSPDSPVLTLPSDEGKPHKHKISS 92


>At1g65220.1 68414.m07394 eIF4-gamma/eIF5/eIF2-epsilon
           domain-containing protein low similarity to SP|P47823
           Translation initiation factor eIF-2B epsilon subunit
           (eIF-2B GDP-GTP exchange factor) {Oryctolagus
           cuniculus}; contains Pfam profile PF02020:
           eIF4-gamma/eIF5/eIF2-epsilon
          Length = 411

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 292 GTIPSSAGKSHRYASASCVRGRSTLLPYILLKYSKLRLRRNRILL 426
           G++ S  G+ H Y+   C   R  +LP ++  Y +  LRR   L+
Sbjct: 79  GSVKSDEGERHPYSIIDCEPKREAILPSVV--YIQKILRRKAFLI 121


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,403,088
Number of Sequences: 28952
Number of extensions: 305278
Number of successful extensions: 908
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)