Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30081
(757 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g56360.1 68418.m07034 calmodulin-binding protein similar to a... 61 7e-10
At4g00180.1 68417.m00019 axial regulator YABBY3 (YABBY3) identic... 30 1.4
At3g33293.1 68416.m04275 hypothetical protein 30 1.4
At3g03380.1 68416.m00336 DegP protease, putative contains simila... 30 1.4
At1g58210.1 68414.m06610 kinase interacting family protein simil... 30 1.4
At5g57640.1 68418.m07201 hypothetical protein 29 2.5
At2g31830.1 68415.m03887 endonuclease/exonuclease/phosphatase fa... 29 4.4
At1g56020.1 68414.m06431 expressed protein 29 4.4
At1g54970.1 68414.m06278 proline-rich family protein similar to ... 29 4.4
At5g62630.1 68418.m07861 expressed protein 28 5.8
At5g15920.1 68418.m01862 structural maintenance of chromosomes (... 28 5.8
At5g14950.1 68418.m01754 glycosyl hydrolase family 38 protein si... 28 5.8
At1g35210.1 68414.m04367 expressed protein 28 5.8
At5g65460.1 68418.m08232 kinesin motor protein-related contains ... 28 7.7
At4g19220.1 68417.m02835 pentatricopeptide (PPR) repeat-containi... 28 7.7
At4g17590.1 68417.m02631 nucleolar protein-related contains weak... 28 7.7
At3g32190.1 68416.m04102 hypothetical protein 28 7.7
At1g80790.1 68414.m09479 XH/XS domain-containing protein / XS zi... 28 7.7
>At5g56360.1 68418.m07034 calmodulin-binding protein similar to
alpha glucosidase II beta subunit from GI:2104691 [Mus
musculus]
Length = 647
Score = 61.3 bits (142), Expect = 7e-10
Identities = 23/68 (33%), Positives = 46/68 (67%)
Frame = +2
Query: 299 QASDARRQYTDAERTVREIESNIRNIKQNLEKDYGLEQEFASLDGDCFEYEDKEYVYKLC 478
+A R++Y ++ + +I+S I ++++ L++D+G E+EF S G CFE + +Y YK+C
Sbjct: 483 EADRVRKEYDESSSKLNKIQSRISSLEKKLKQDFGPEKEFYSFHGRCFESKQGKYTYKVC 542
Query: 479 MFQKVTQK 502
+++ TQ+
Sbjct: 543 AYKEATQE 550
>At4g00180.1 68417.m00019 axial regulator YABBY3 (YABBY3) identical
to YABBY3 [Arabidopsis thaliana] GI:4928753
Length = 240
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = -3
Query: 560 SGPAHSPQLPRPTSIPPSWIFVLPSGTYTVCIHILCLHIQSNHHPRKQIPVLDHN 396
S HS P P PP+ + + SG + ++++ H S HHP + + + N
Sbjct: 76 SNLGHSFLPPPPPPPPPNLLEEMRSGGQNINMNMMMSHHASAHHPNEHLVMATRN 130
>At3g33293.1 68416.m04275 hypothetical protein
Length = 145
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +2
Query: 326 TDAERTVREIESNIRNIKQNLEKDYGLEQEFASLD 430
++ E ++E ESN+ + Q LE+D+ EQE + L+
Sbjct: 18 SELESDIKEHESNLLLLDQTLEEDFSEEQERSKLE 52
>At3g03380.1 68416.m00336 DegP protease, putative contains
similarity to degP GI:2623992 from [Bradyrhizobium
japonicum]
Length = 1097
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 559 QDLPILPNYQDLPPYHHLGFLCYLLEHTQFV 467
+++PI P Y+D P H GF CY QF+
Sbjct: 108 EEIPIYPVYRD--PVHDFGFFCYDPSAVQFL 136
>At1g58210.1 68414.m06610 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) {Petunia
integrifolia}
Length = 1246
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +2
Query: 284 QKIVDQASDARRQYTDAERTVREIESNIRNIKQNLE-KDYGLEQEFASLDG 433
QK+ DQ + + Q+ A RTV ++ I+++K + + + G+ QE + G
Sbjct: 723 QKVEDQNKNLQNQFKVANRTVDDLSGKIQDVKMDEDVEGAGIFQELPVVSG 773
>At5g57640.1 68418.m07201 hypothetical protein
Length = 226
Score = 29.5 bits (63), Expect = 2.5
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Frame = +2
Query: 251 VKQSKSYNDETQKIVDQASDARRQYTDAERTVRE---IESNIRNIKQN--LEKDYGLEQE 415
V ++K+ D + D ++ R + +R V E + + ++K++ L +D G E+E
Sbjct: 7 VAEAKTEEDPSTNQGDGDDESPRTLIEDQRDVEESKTLSEDQVDVKESKTLIEDQGDEEE 66
Query: 416 FASLDGDCFEYEDKEYVYKLCMFQK 490
+LD D E E++ LC F K
Sbjct: 67 SKTLDEDLDETEEESGECPLCQFIK 91
>At2g31830.1 68415.m03887 endonuclease/exonuclease/phosphatase
family protein belongs to Pfam:PF03372:
Endonuclease/Exonuclease/phosphatase family; contains 4
WD-40 repeats (PF00400);similar to SP:Q01968 Inositol
polyphosphate 5-phosphatase OCRL-1 (EC 3.1.3.-)(Lowe's
oculocerebrorenal syndrome protein) (SP:Q01968) [Homo
sapiens]
Length = 1144
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 634 VVSNWDHSGKQFPFVYVHQQSIYCF 560
V++ WD +G + V HQQ++ CF
Sbjct: 469 VIAQWDGNGSRLREVNHHQQAVLCF 493
>At1g56020.1 68414.m06431 expressed protein
Length = 398
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -1
Query: 112 LNIPCSIIKSGFKIGQVVDKNASLSTFSSPPKN 14
LN+P +KSG GQ+ ++S S+ S P N
Sbjct: 339 LNVPVCSLKSGLFFGQLFSSSSSSSSSSPSPGN 371
>At1g54970.1 68414.m06278 proline-rich family protein similar to
proline-rich protein GI:170048 from [Glycine max]
Length = 335
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -3
Query: 566 LFSGPAHSPQLPRPTSIPPSWIFVLPSGTYTVCIH 462
+++ P + P LP P PP LP YT +H
Sbjct: 32 VYTSPVNKPTLPPPVYTPPVHKPTLPPPVYTPPVH 66
>At5g62630.1 68418.m07861 expressed protein
Length = 696
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 529 LGNWGEWAGPENNKYSVDEHTQMEI 603
LG WG ++ P+NN + +E+ Q EI
Sbjct: 426 LGLWGNYSIPKNNPFQGNENEQPEI 450
>At5g15920.1 68418.m01862 structural maintenance of chromosomes
(SMC) family protein (MSS2) similar to SMC-related
protein MSS2 [Arabidopsis thaliana] GI:9965743; contains
Pfam profiles PF02483: SMC family C-terminal domain,
PF02463: RecF/RecN/SMC N terminal domain
Length = 1053
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +2
Query: 308 DARRQYTDAERTVREIESNIRNIKQNLEKDYGLEQEFASLDGDC 439
DA+++ +AE+ + E N+ ++K+ +EK ++E A D C
Sbjct: 255 DAKKRMKEAEKKLDEAAKNLNSMKEPIEKQ---KKEKAETDSKC 295
>At5g14950.1 68418.m01754 glycosyl hydrolase family 38 protein
similar to alpha-mannosidase II SP:P27046 from [Mus
musculus]
Length = 1173
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/47 (40%), Positives = 24/47 (51%)
Frame = +2
Query: 329 DAERTVREIESNIRNIKQNLEKDYGLEQEFASLDGDCFEYEDKEYVY 469
D RTVRE E++ N + E G F SL GD F Y D++ Y
Sbjct: 454 DYFRTVRE-EADRVNYSRPGEVGSGQVVGFPSLSGDFFTYADRQQDY 499
>At1g35210.1 68414.m04367 expressed protein
Length = 156
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 562 NNKYSVDEHTQMEIACRNGPSSKQPTG*CSTC 657
+NK ++ T+ + C+ P +Q G CS C
Sbjct: 16 SNKNKAEDKTKNAVFCKKHPKHRQSPGVCSLC 47
>At5g65460.1 68418.m08232 kinesin motor protein-related contains
similarity to kinesin heavy chain
Length = 1281
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +2
Query: 275 DETQKIVDQASDARRQYTDAERTVREIESNIRNIKQNLEK 394
D +K D A+DAR++ + ER + ++ + +KQ L++
Sbjct: 477 DTIKKWRDVANDARKEVLEKERENQRLKQEVTGLKQALKE 516
>At4g19220.1 68417.m02835 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 932
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 458 EYVYKLCMFQKVTQKSKMVVWR*VL-VIGENGQVLKTINTLLMNIHK 595
E V C+F ++ +K ++VW ++ + +NG+ + + + IHK
Sbjct: 137 ELVSSSCLFDELKEKD-VIVWNSMITALNQNGRYIAAVGLFIEMIHK 182
>At4g17590.1 68417.m02631 nucleolar protein-related contains weak
similarity to Swiss-Prot:P40991 nucleolar protein NOP2
[Saccharomyces cerevisiae]
Length = 109
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 673 LVSQVHRLNINQLVVSNWDHSGKQFPF 593
L + +HR+ I VVSN++ + K FP+
Sbjct: 70 LYANLHRMGITNTVVSNYNINTKGFPY 96
>At3g32190.1 68416.m04102 hypothetical protein
Length = 358
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 326 TDAERTVREIESNIRNIKQNLEKDYGLEQEFASL 427
T+ E ++E ESN+ + Q ++D+ EQE + L
Sbjct: 187 TELESDIKEYESNLLLLDQTHDEDFSEEQERSEL 220
>At1g80790.1 68414.m09479 XH/XS domain-containing protein / XS zinc
finger domain-containing protein contains Pfam domains
PF03469: XH domain, PF03468: XS domain and PF03470: XS
zinc finger domain
Length = 634
Score = 27.9 bits (59), Expect = 7.7
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Frame = +2
Query: 269 YNDETQKIVDQASDA-RRQYTDAERTVREIESNIRNIK---QNLEKDYGL-EQEFASLDG 433
Y ET+K+ + + + R + + ER E+E+ + N+K + L+K L E E LD
Sbjct: 298 YKQETKKMQELSREKINRIFREKERLTNELEAKMNNLKIWSKQLDKKQALTELERQKLDE 357
Query: 434 D 436
D
Sbjct: 358 D 358
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,338,446
Number of Sequences: 28952
Number of extensions: 354390
Number of successful extensions: 1122
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -