Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30077
         (849 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g44590.1 68418.m05464 hypothetical protein                          30   1.7  
At4g14310.2 68417.m02205 peroxisomal membrane protein-related co...    30   2.2  
At4g14310.1 68417.m02204 peroxisomal membrane protein-related co...    30   2.2  
At1g51920.1 68414.m05853 expressed protein                             30   2.2  
At5g16520.1 68418.m01932 expressed protein                             29   3.9  
At3g04060.1 68416.m00428 no apical meristem (NAM) family protein...    28   6.8  
At1g64630.1 68414.m07327 protein kinase family protein contains ...    28   6.8  
At5g44600.1 68418.m05465 expressed protein                             28   9.0  

>At5g44590.1 68418.m05464 hypothetical protein 
          Length = 349

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
 Frame = -2

Query: 845 ATLQVLFEEFPGNQSFGLSPDC--LSRAWLTGGNPEL 741
           +T+++L E FPG  S+  +PD   L+   LTGG P+L
Sbjct: 279 STVKILSEAFPGQVSWKRTPDSEGLNFVALTGGLPDL 315


>At4g14310.2 68417.m02205 peroxisomal membrane protein-related
           contains weak similarity to Peroxisomal membrane protein
           2 (22 kDa peroxisomal membrane protein)
           (Swiss-Prot:P42925) [Mus musculus]
          Length = 965

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = -2

Query: 287 EERKCVRHEPVDFGCVQNIASILRQSNVGGWAGPTGR--VCAARQRQTSYYD 138
           E R+ +  E +D GC+  +  I  +++ GGW    G   + A      SYYD
Sbjct: 496 ENREEMELEEIDDGCMYQLNDIGSKTSTGGWFVSEGEAVILAHDDGSCSYYD 547


>At4g14310.1 68417.m02204 peroxisomal membrane protein-related
           contains weak similarity to Peroxisomal membrane protein
           2 (22 kDa peroxisomal membrane protein)
           (Swiss-Prot:P42925) [Mus musculus]
          Length = 1087

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = -2

Query: 287 EERKCVRHEPVDFGCVQNIASILRQSNVGGWAGPTGR--VCAARQRQTSYYD 138
           E R+ +  E +D GC+  +  I  +++ GGW    G   + A      SYYD
Sbjct: 496 ENREEMELEEIDDGCMYQLNDIGSKTSTGGWFVSEGEAVILAHDDGSCSYYD 547


>At1g51920.1 68414.m05853 expressed protein
          Length = 78

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 394 SRSCLERCPR-PLMERCPCCCSFMERCPSSFLECCRICSPPV 516
           S+S   R PR P+  R P C + +   P+    CCR C+ P+
Sbjct: 26  SQSNATRIPRAPISSRRPICPACVCCEPAPLGSCCRCCASPI 67


>At5g16520.1 68418.m01932 expressed protein 
          Length = 608

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 40  PAALSTDKNKHYLYLSFTLSLLCFISLRK 126
           P+ +STDK+ +Y  +SF  +L  F  +RK
Sbjct: 36  PSTISTDKDVNYSVISFAETLFAFDRIRK 64


>At3g04060.1 68416.m00428 no apical meristem (NAM) family protein
           contains Pfam PF02365 : No apical meristem (NAM)
           protein; similar to cup-shaped cotyledon CUC2
           (GI:1944132) [Arabidopsis thaliana]
          Length = 338

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 240 DTPEVHRLVPHTFPLFSRLRKITPTQMTTDHTTLDGTMKSTG 365
           D P++ ++    F  F +  +  PT M T+  T+ G  K+TG
Sbjct: 64  DLPKIAKMGEKEFYFFCQRDRKYPTGMRTNRATVSGYWKATG 105


>At1g64630.1 68414.m07327 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719;
           contains serine/threonine protein kinases active-site
           signature, PROSITE:PS00108
          Length = 524

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 436 RCPCCCSFMERCPSSFLECCRICSPPVAE 522
           R  CCC  +E   SSFL+ C + S   +E
Sbjct: 457 RLGCCCEAVESLLSSFLDSCSMVSNKQSE 485


>At5g44600.1 68418.m05465 expressed protein 
          Length = 348

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = -2

Query: 845 ATLQVLFEEFPGNQSFGLSPDC--LSRAWLTGGNPEL 741
           +T+++L E FPG   +  +PD   L+   LTGG P+L
Sbjct: 266 STVKILSEAFPGQVCWKRTPDSEGLNFLALTGGLPDL 302


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,611,137
Number of Sequences: 28952
Number of extensions: 405746
Number of successful extensions: 1262
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1262
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)