Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30076
         (828 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g01330.1 68416.m00049 transcription factor, putative / E2F-li...    29   5.0  
At3g23685.1 68416.m02978 F-box family protein contains TIGR01640...    28   8.7  

>At3g01330.1 68416.m00049 transcription factor, putative / E2F-like
           repressor E2L2 (E2L2) identical to E2F-like repressor
           E2L2 [Arabidopsis thaliana] GI:20502506
          Length = 354

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 493 MQLYNSTDSQIVDATKITNCSLTKSRCYYSCIRKYDWY 606
           + L+NS + + V  T+ITN    +++ Y S IRK   Y
Sbjct: 234 LSLFNSGEPKRVFGTEITNLRAKRNKTYCSSIRKQIGY 271


>At3g23685.1 68416.m02978 F-box family protein contains TIGR01640:
           F-box protein interaction domain
          Length = 330

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 559 TKSRCYYSCIRKYDWYYNCYLVKLFLRFPIY 651
           T S CYY  +   D+YYN +  K F  + IY
Sbjct: 107 TDSCCYYKLLGLIDYYYNAH-EKQFFWYGIY 136


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,656,988
Number of Sequences: 28952
Number of extensions: 232282
Number of successful extensions: 477
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1902108000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)