Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20021
(476 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D) 150 5e-37
At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C) 150 5e-37
At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B) ribo... 150 5e-37
At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D) 146 9e-36
At2g42740.1 68415.m05293 60S ribosomal protein L11 (RPL11A) 146 9e-36
At3g06210.1 68416.m00714 expressed protein contains Prosite PS00... 31 0.31
At1g64960.1 68414.m07363 expressed protein 31 0.53
At5g23970.1 68418.m02817 transferase family protein similar to ... 28 3.8
At4g14280.1 68417.m02201 hypothetical protein 28 3.8
At5g47160.1 68418.m05813 YDG/SRA domain-containing protein low s... 27 5.0
At3g02740.1 68416.m00266 aspartyl protease family protein contai... 27 8.7
>At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D)
Length = 182
Score = 150 bits (363), Expect = 5e-37
Identities = 81/143 (56%), Positives = 98/143 (68%), Gaps = 2/143 (1%)
Frame = +1
Query: 52 SEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGNSLYFPRLGIQCGLLVSV 231
SE N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+G + F +
Sbjct: 3 SEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIR 62
Query: 232 VMKRLLSMYSPRA-KAEEILRX-FKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSI 405
+++ + R KA ++L KV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS
Sbjct: 63 RNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPST 122
Query: 406 GIYGLDFYVVLCRPGFNVAHRRR 474
GIYG+DFYVVL RPG+ VA RRR
Sbjct: 123 GIYGMDFYVVLERPGYRVARRRR 145
>At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C)
Length = 182
Score = 150 bits (363), Expect = 5e-37
Identities = 81/143 (56%), Positives = 98/143 (68%), Gaps = 2/143 (1%)
Frame = +1
Query: 52 SEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGNSLYFPRLGIQCGLLVSV 231
SE N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+G + F +
Sbjct: 3 SEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIR 62
Query: 232 VMKRLLSMYSPRA-KAEEILRX-FKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSI 405
+++ + R KA ++L KV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS
Sbjct: 63 RNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPST 122
Query: 406 GIYGLDFYVVLCRPGFNVAHRRR 474
GIYG+DFYVVL RPG+ VA RRR
Sbjct: 123 GIYGMDFYVVLERPGYRVARRRR 145
>At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B)
ribosomal protein L11, cytosolic, Arabidopsis thaliana,
PIR:S49033
Length = 182
Score = 150 bits (363), Expect = 5e-37
Identities = 81/143 (56%), Positives = 98/143 (68%), Gaps = 2/143 (1%)
Frame = +1
Query: 52 SEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGNSLYFPRLGIQCGLLVSV 231
SE N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+G + F +
Sbjct: 3 SEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIR 62
Query: 232 VMKRLLSMYSPRA-KAEEILRX-FKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSI 405
+++ + R KA ++L KV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS
Sbjct: 63 RNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPST 122
Query: 406 GIYGLDFYVVLCRPGFNVAHRRR 474
GIYG+DFYVVL RPG+ VA RRR
Sbjct: 123 GIYGMDFYVVLERPGYRVARRRR 145
>At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D)
Length = 172
Score = 146 bits (353), Expect = 9e-36
Identities = 78/135 (57%), Positives = 95/135 (70%), Gaps = 2/135 (1%)
Frame = +1
Query: 76 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGNSLYFPRLGIQCGLLVSVVMKRLLSM 255
MR++ ++KL LNI VGESGDRLTRA+KVLEQL+G + F + +++
Sbjct: 1 MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 60
Query: 256 YSPRA-KAEEILRX-FKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFY 429
+ R KA ++L KV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DFY
Sbjct: 61 VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 120
Query: 430 VVLCRPGFNVAHRRR 474
VVL RPG+ VA RRR
Sbjct: 121 VVLERPGYRVARRRR 135
>At2g42740.1 68415.m05293 60S ribosomal protein L11 (RPL11A)
Length = 172
Score = 146 bits (353), Expect = 9e-36
Identities = 78/135 (57%), Positives = 95/135 (70%), Gaps = 2/135 (1%)
Frame = +1
Query: 76 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGNSLYFPRLGIQCGLLVSVVMKRLLSM 255
MR++ ++KL LNI VGESGDRLTRA+KVLEQL+G + F + +++
Sbjct: 1 MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 60
Query: 256 YSPRA-KAEEILRX-FKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFY 429
+ R KA ++L KV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DFY
Sbjct: 61 VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 120
Query: 430 VVLCRPGFNVAHRRR 474
VVL RPG+ VA RRR
Sbjct: 121 VVLERPGYRVARRRR 135
>At3g06210.1 68416.m00714 expressed protein contains Prosite
PS00616: Histidine acid phosphatases phosphohistidine
signature;
Length = 840
Score = 31.5 bits (68), Expect = 0.31
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 278 KRSLXGLKSENMNCGVTTSPPRVILASVF--KNTLTWVSSTIPQLEFMDWTFTSYFAGQV 451
KR G+ ++ G+ + R+ +F + TLTW +S +P L + W + S + ++
Sbjct: 168 KRISDGIFKPILDNGLREATTRIGRQEIFDRRTTLTWKNSEVPLLPYARWLYISSYVSRI 227
>At1g64960.1 68414.m07363 expressed protein
Length = 1168
Score = 30.7 bits (66), Expect = 0.53
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = -3
Query: 390 LDTQVNVFLNTEAKITRGGEVVTPQFIFSDFKPSKDLFCFSPRTVHGQQSFHYDGYQK 217
L T FL++ K+T + + I + KPS DL P +H H + +QK
Sbjct: 9 LKTSSEEFLSSAVKLTLKSSKPSLKTIINAVKPSSDLSSSLPLALHNSILHHTESFQK 66
>At5g23970.1 68418.m02817 transferase family protein similar to
acetyl CoA: benzylalcohol acetyltransferase; BEAT
[Clarkia breweri][GI:3170250][PMID:9628024],
deacetylvindoline 4-O-acetyltransferase [Catharanthus
roseus][GI:4091808][PMID:9681034]
Length = 428
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = -3
Query: 378 VNVFLNTEAKITRG-GEVVTPQFIFSDFKPSKDLFC-FSPRTVHGQQS 241
++ F+ + K ++G + V P+F+ +DF P D+ F P VH +S
Sbjct: 155 LSTFVCSWTKASKGYADTVDPEFVGADFYPPADISIEFPPLLVHETKS 202
>At4g14280.1 68417.m02201 hypothetical protein
Length = 798
Score = 27.9 bits (59), Expect = 3.8
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 371 TLTWVSSTIPQLEFMDWTFTS 433
T TW SS +P L + W F S
Sbjct: 167 TRTWKSSDVPMLPYTGWVFVS 187
>At5g47160.1 68418.m05813 YDG/SRA domain-containing protein low
similarity to nuclear protein np95 [Mus musculus]
GI:4220590; contains Pfam profile PF02182: YDG/SRA
domain
Length = 415
Score = 27.5 bits (58), Expect = 5.0
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 214 GLLVSVVMKRLLSMYSPRAKAEEILRXFKVREYELRRDNFSATG 345
G+L + RL +PR K +E+LR F + EL R+ + G
Sbjct: 188 GVLSVIQRNRLSKDLTPRQKVQEVLRIFTLVFDELDRNKAARRG 231
>At3g02740.1 68416.m00266 aspartyl protease family protein contains
Pfam profile: PF00026 eukaryotic aspartyl protease
Length = 488
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -1
Query: 362 IPKPKLPVAEKLSRRNSYSLTLNXLRISSALALGLYMDSNLFITTDTK 219
+ PK+ LS+ YS+ LN + + +++ L + SN F + D K
Sbjct: 267 VVSPKVKTTPMLSKSAHYSVNLNAIEVGNSV---LELSSNAFDSGDDK 311
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,033,112
Number of Sequences: 28952
Number of extensions: 205733
Number of successful extensions: 611
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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