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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20019
         (587 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63330.1 68418.m07948 DNA-binding bromodomain-containing prot...    32   0.25 
At3g30710.1 68416.m03897 hypothetical protein similar to Arginin...    31   0.75 
At5g49540.1 68418.m06131 expressed protein contains Pfam profile...    27   7.0  
At3g18770.1 68416.m02382 expressed protein                             27   7.0  
At1g15180.1 68414.m01815 MATE efflux family protein contains Pfa...    27   7.0  
At5g26850.1 68418.m03203 expressed protein                             27   9.3  

>At5g63330.1 68418.m07948 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 477

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -3

Query: 504 PIRSDEDYSQKSPISASVKFMEFIRSANLKVESTRNLHW-HRSGWSLSSSV 355
           P+RSD+  ++K P   +V     + S   + E+  N  W H+SGW   + V
Sbjct: 135 PVRSDKQRNKKGPSRLNVPTSYTVASVMKECETLLNRLWSHKSGWPFRTPV 185


>At3g30710.1 68416.m03897 hypothetical protein similar to
           Arginine-tRNA-protein transferase 1 (EC
           2.3.2.8)(R-transferase 1) (Arginyltransferase 1)
           (Arginyl-tRNA--protein transferase 1)(SP:Q9Z2A5) {Mus
           musculus}; similar to MRP homologs in mycobacteria
           (SP:P53382), which belong to the MR?/NBP35 family of
           ATP-binding proteins.
          Length = 523

 Score = 30.7 bits (66), Expect = 0.75
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 11  LLARVVRAHLDTCEFTRDRVASMRARARDCPTYSQPTL-ACPLNPAPELQ 157
           LL  ++R  +D   F RDR+ +  A A   P  + PT+   P+   P++Q
Sbjct: 228 LLTLLLRGQIDWATFNRDRIKTALAVATTGPVIALPTVQRDPIEEVPQVQ 277


>At5g49540.1 68418.m06131 expressed protein contains Pfam profile
           PF05646: Protein of unknown function (DUF786)
          Length = 114

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = +2

Query: 95  DCPTYSQPTLACPLNPAPELQSEKEFSQRFAHVIRGVIDFAGLIPGF 235
           D PT+S   L    N    +Q+ + F    A V+ G+I F GLI GF
Sbjct: 14  DIPTFSAENLQ---NNLKVIQNSRTFLSIIAGVLAGIIGFNGLI-GF 56


>At3g18770.1 68416.m02382 expressed protein 
          Length = 625

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 228 GMRPAKSITPRITWAKRCENSFSD 157
           G+RP+ S +PRI++++    SF D
Sbjct: 457 GVRPSSSSSPRISFSRSSSRSFQD 480


>At1g15180.1 68414.m01815 MATE efflux family protein contains Pfam
           profile PF01554: Uncharacterized membrane protein family
          Length = 482

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +3

Query: 267 LKSGLFDALFVRLICMFDAPLNSIICLNGQLMKRDSIQSGANASFSLI---LLSSLRNV 434
           L+ GLF A   RLIC F AP+ +++     L     +  G   + SL    L SS  NV
Sbjct: 27  LRDGLFTAELKRLIC-FAAPMAAVVIAQFMLQIISMVMVGHLGNLSLASASLASSFCNV 84


>At5g26850.1 68418.m03203 expressed protein
          Length = 919

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = +1

Query: 268 SKVVCSMHCSCDSSVCLTLLLIVSSVSMGN**RETPSRAVPMQVSR*FYFQVCGTY 435
           +K++C  HC    +   T LL V +  + N  ++TP+      ++R  Y QV GTY
Sbjct: 99  NKMLC--HCKDQMAYFATSLLNVVTELLDNSKQDTPTILGCQTLTRFIYSQVDGTY 152


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,374,218
Number of Sequences: 28952
Number of extensions: 243630
Number of successful extensions: 719
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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