Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20008
         (705 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)            87   1e-17
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ...    83   2e-16
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45...    34   0.11 
At5g15920.1 68418.m01862 structural maintenance of chromosomes (...    29   4.0  
At1g77700.1 68414.m09047 pathogenesis-related thaumatin family p...    28   5.2  
At2g16090.1 68415.m01845 zinc finger protein-related contains si...    28   6.9  
At5g60150.1 68418.m07540 expressed protein ; expression supporte...    27   9.2  
At3g55580.1 68416.m06171 regulator of chromosome condensation (R...    27   9.2  
At3g09210.1 68416.m01095 KOW domain-containing transcription fac...    27   9.2  
At2g31510.1 68415.m03850 IBR domain-containing protein / ARIADNE...    27   9.2  
At1g77300.1 68414.m09002 SET domain-containing protein similar t...    27   9.2  

>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
          Length = 257

 Score = 86.6 bits (205), Expect = 1e-17
 Identities = 41/66 (62%), Positives = 50/66 (75%)
 Frame = +2

Query: 506 HVTKLVEKKKAQLWSSLMMLIPLSWFLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTC 685
           HVT L+E+ KAQL      + P+   ++LPALCRKM VPYCIVKGKSRLGA+VH+KT +C
Sbjct: 133 HVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTASC 192

Query: 686 LALTNV 703
           L LT V
Sbjct: 193 LCLTTV 198



 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 35/55 (63%), Positives = 43/55 (78%)
 Frame = +3

Query: 234 LVQICKMPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 398
           L +  K PK IR+QRQK +L++RLKVPP +NQFT+TLDK  A  LFK+L KYRPE
Sbjct: 43  LSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKVLLKYRPE 97



 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 20/41 (48%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
 Frame = +1

Query: 169 NPLFEKRPKNFAIGQGIQPTRDLSRFVRCP-SISASSARRL 288
           NPLFE+RPK F IG  + P +DLSR+++ P SI     +R+
Sbjct: 21  NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRI 61


>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
           RIBOSOMAL PROTEIN L7A - Oryza sativa,
           SWISSPROT:RL7A_ORYSA
          Length = 256

 Score = 82.6 bits (195), Expect = 2e-16
 Identities = 40/66 (60%), Positives = 48/66 (72%)
 Frame = +2

Query: 506 HVTKLVEKKKAQLWSSLMMLIPLSWFLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTC 685
           HVT L+E+ KAQL      + P+   ++LPALCRKM VPYCIVKGKSRLGA+VH+KT   
Sbjct: 132 HVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTAAA 191

Query: 686 LALTNV 703
           L LT V
Sbjct: 192 LCLTTV 197



 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 36/55 (65%), Positives = 43/55 (78%)
 Frame = +3

Query: 234 LVQICKMPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 398
           L +  K PK IR+QRQK +L++RLKVPP +NQFT+TLDK  A  LFKIL KYRPE
Sbjct: 42  LSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPE 96



 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 20/41 (48%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
 Frame = +1

Query: 169 NPLFEKRPKNFAIGQGIQPTRDLSRFVRCP-SISASSARRL 288
           NPLFE+RPK F IG  + P +DLSR+++ P SI     +R+
Sbjct: 20  NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRI 60


>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 156

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 20/64 (31%), Positives = 26/64 (40%)
 Frame = +2

Query: 503 KHVTKLVEKKKAQLWSSLMMLIPLSWFLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCT 682
           K V K + + +  L      + P+     LP LC + GVPY  V  K  L      K  T
Sbjct: 56  KEVVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGATKRPT 115

Query: 683 CLAL 694
           C  L
Sbjct: 116 CCVL 119


>At5g15920.1 68418.m01862 structural maintenance of chromosomes (SMC)
            family protein (MSS2) similar to SMC-related protein MSS2
            [Arabidopsis thaliana] GI:9965743; contains Pfam profiles
            PF02483: SMC family C-terminal domain, PF02463:
            RecF/RecN/SMC N terminal domain
          Length = 1053

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = -2

Query: 494  SDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCL 336
            + G+ P+  R +F   +  +S  QP  P CF L P  L  LE + +CS++  +
Sbjct: 971  NQGMDPINERKMFQQLVRAAS--QPNTPQCFLLTPKLLPELEYSEACSILNIM 1021


>At1g77700.1 68414.m09047 pathogenesis-related thaumatin family
           protein similar to thaumatin-like protein [Arabidopsis
           thaliana] GI:2435406; contains Pfam profile PF00314:
           Thaumatin family
          Length = 356

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = +1

Query: 556 HDVDPIELVSLPASVMP*NGR---TILHCQGQVPPRCTCTPQDMHMLSSNK 699
           +DV  ++  +LP SV P NG+   ++  C   + P C   PQ++ + S+ K
Sbjct: 184 YDVSLVDGFNLPMSVTPMNGKGNCSVAGCVADLRPHC---PQELAVKSNGK 231


>At2g16090.1 68415.m01845 zinc finger protein-related contains
           similarity to zinc finger proteins and Pfam domain,
           PF01485: IBR domain
          Length = 593

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 519 SLVTCLCRIGWCW 481
           +LVTCLCR  +CW
Sbjct: 298 NLVTCLCRQSFCW 310


>At5g60150.1 68418.m07540 expressed protein ; expression supported by
            MPSS
          Length = 1195

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -1

Query: 681  VHVLRCTSAPRRDLPLTMQYGTPILRHN--AGRKRNQLNGINIMSDD 547
            V V++ +  P    P   + GTPI      +GR   Q+N  N++SDD
Sbjct: 1044 VKVVKISPDPVSFAPREEELGTPIPMKETISGRDDMQINEFNVLSDD 1090


>At3g55580.1 68416.m06171 regulator of chromosome condensation
           (RCC1) family protein UVB-resistance protein UVR8,
           Arabidopsis thaliana, EMBL:AF130441; contains Pfam
           PF00415: Regulator of chromosome condensation (RCC1)
           domain
          Length = 488

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 282 SGAGCGYTWASYKSGQVPSW 223
           SG GCG+  A+ +SG++ +W
Sbjct: 69  SGGGCGFAMATAESGKLITW 88


>At3g09210.1 68416.m01095 KOW domain-containing transcription factor
           family protein ; est match
          Length = 333

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 455 LGNLSFSSFPQPLFPGCFSLRPVFLQNLEKAL 360
           L N S S  P+P+FPGC  +R +  + +  ++
Sbjct: 141 LKNGSISVKPKPVFPGCIFIRCILNKEIHDSI 172


>At2g31510.1 68415.m03850 IBR domain-containing protein /
           ARIADNE-like protein ARI7 (ARI7) identical to
           ARIADNE-like protein ARI7 [Arabidopsis thaliana]
           GI:29125028; contains similarity to Swiss-Prot:Q94981
           ariadne-1 protein (Ari-1) [Drosophila melanogaster];
           contains Pfam profile PF01485: IBR domain
          Length = 562

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 513 VTCLCRIGWCWASLVEAH 460
           V+CLC   +CW    EAH
Sbjct: 246 VSCLCSFSFCWNCTEEAH 263


>At1g77300.1 68414.m09002 SET domain-containing protein similar to
            huntingtin interacting protein 1 [Homo sapiens]
            GI:12697196; contains Pfam profile PF00856: SET domain
          Length = 1759

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 251  DAQVYPHPAPEGCTSASSESAPSDQ-PIYP 337
            D ++ P P P   TS SSES+  D+  IYP
Sbjct: 1313 DKKILPRPRPRMKTSRSSESSKRDKGGIYP 1342


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,594,189
Number of Sequences: 28952
Number of extensions: 289775
Number of successful extensions: 928
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)