Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00029
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g08710.1 68417.m01439 hypothetical protein contains Pfam prof...    28   5.0  
At2g06420.1 68415.m00711 expressed protein                             28   6.7  
At1g24060.1 68414.m03037 expressed protein                             27   8.8  

>At4g08710.1 68417.m01439 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 715

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = -2

Query: 149 RMWSDVTYCRKFKVNAAIISIVFGPIMTLNNH----ITLNEQYV 30
           ++ SD+T+CR F+        + G I    NH    +T NE+Y+
Sbjct: 366 KVMSDLTFCRNFQWGRYSFDYMLGTISHTVNHFNGSVTNNEKYI 409


>At2g06420.1 68415.m00711 expressed protein
          Length = 249

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = -2

Query: 140 SDVTYCRKFKVNAAIISIVFG----PIMTLNNHITLNEQYV 30
           SD+T+CR F+        + G    P+   N  +T NE+Y+
Sbjct: 187 SDLTFCRNFQWGRYSFDYMLGNISHPVNHFNGSVTNNEKYI 227


>At1g24060.1 68414.m03037 expressed protein
          Length = 122

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 607 CDSSSLLKVTFEYSKLSRFTC 669
           CD  S++K+T E +K +R TC
Sbjct: 44  CDDPSMIKITSENNKRTRATC 64


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,804,415
Number of Sequences: 28952
Number of extensions: 234786
Number of successful extensions: 462
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)