Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00026
(700 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g54760.1 68418.m06820 eukaryotic translation initiation facto... 60 2e-09
At4g27130.1 68417.m03899 eukaryotic translation initiation facto... 60 2e-09
At1g54290.1 68414.m06189 eukaryotic translation initiation facto... 60 2e-09
At5g54940.2 68418.m06843 eukaryotic translation initiation facto... 56 2e-08
At5g54940.1 68418.m06842 eukaryotic translation initiation facto... 56 2e-08
At1g05530.1 68414.m00567 UDP-glucoronosyl/UDP-glucosyl transfera... 34 0.10
At5g28530.1 68418.m03478 far-red impaired responsive protein, pu... 31 0.97
At4g18160.1 68417.m02698 outward rectifying potassium channel, p... 29 3.0
At3g44920.1 68416.m04839 cation/hydrogen exchanger, putative (CH... 29 3.9
At1g27900.1 68414.m03419 RNA helicase, putative similar to SP|Q1... 28 6.8
At1g75990.1 68414.m08824 26S proteasome regulatory subunit S3, p... 27 9.0
At1g63900.1 68414.m07235 zinc finger (C3HC4-type RING finger) fa... 27 9.0
>At5g54760.1 68418.m06820 eukaryotic translation initiation factor
SUI1, putative similar to SP|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 113
Score = 59.7 bits (138), Expect = 2e-09
Identities = 24/43 (55%), Positives = 35/43 (81%)
Frame = +2
Query: 308 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 436
GTVV+ E G+V+QLQGDQR+N+ +L ++GLVK + +K+HGF
Sbjct: 71 GTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113
Score = 51.2 bits (117), Expect = 6e-07
Identities = 24/39 (61%), Positives = 27/39 (69%)
Frame = +1
Query: 133 FDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGL 249
FDPFADA VH+R+QQRNGRK+LTTVQGL
Sbjct: 12 FDPFADANVEDSGAGTKEYVHIRVQQRNGRKSLTTVQGL 50
>At4g27130.1 68417.m03899 eukaryotic translation initiation factor
SUI1, putative similar to SP|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 113
Score = 59.7 bits (138), Expect = 2e-09
Identities = 24/43 (55%), Positives = 35/43 (81%)
Frame = +2
Query: 308 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 436
GTVV+ E G+V+QLQGDQR+N+ +L ++GLVK + +K+HGF
Sbjct: 71 GTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113
Score = 51.6 bits (118), Expect = 5e-07
Identities = 24/39 (61%), Positives = 27/39 (69%)
Frame = +1
Query: 133 FDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGL 249
FDPFADA VH+R+QQRNGRK+LTTVQGL
Sbjct: 12 FDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGL 50
>At1g54290.1 68414.m06189 eukaryotic translation initiation factor
SUI1, putative similar to P|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 113
Score = 59.7 bits (138), Expect = 2e-09
Identities = 24/43 (55%), Positives = 35/43 (81%)
Frame = +2
Query: 308 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 436
GTVV+ E G+V+QLQGDQR+N+ +L ++GLVK + +K+HGF
Sbjct: 71 GTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113
Score = 53.2 bits (122), Expect = 2e-07
Identities = 25/47 (53%), Positives = 30/47 (63%)
Frame = +1
Query: 109 MSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGL 249
+ +Q FDPFADA VH+R+QQRNGRK+LTTVQGL
Sbjct: 4 LEVQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGL 50
>At5g54940.2 68418.m06843 eukaryotic translation initiation factor
SUI1, putative similar to SP|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 112
Score = 56.4 bits (130), Expect = 2e-08
Identities = 21/43 (48%), Positives = 34/43 (79%)
Frame = +2
Query: 308 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 436
G VV+ E G+++QLQGDQR+ + Q+L ++G+ K +Q+K+HGF
Sbjct: 70 GNVVQDKELGKIIQLQGDQRKKVSQFLVQTGIAKKDQIKIHGF 112
Score = 52.0 bits (119), Expect = 4e-07
Identities = 25/55 (45%), Positives = 36/55 (65%)
Frame = +1
Query: 109 MSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSNMT*RR 273
+ IQ + +DPFA+A S ++ +H+RIQQRNG+K+LTTVQGL + R
Sbjct: 4 LDIQIPSAYDPFAEAKDSDAPGAKEN-IHIRIQQRNGKKSLTTVQGLKKEYSYER 57
>At5g54940.1 68418.m06842 eukaryotic translation initiation factor
SUI1, putative similar to SP|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 112
Score = 56.4 bits (130), Expect = 2e-08
Identities = 21/43 (48%), Positives = 34/43 (79%)
Frame = +2
Query: 308 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 436
G VV+ E G+++QLQGDQR+ + Q+L ++G+ K +Q+K+HGF
Sbjct: 70 GNVVQDKELGKIIQLQGDQRKKVSQFLVQTGIAKKDQIKIHGF 112
Score = 52.0 bits (119), Expect = 4e-07
Identities = 25/55 (45%), Positives = 36/55 (65%)
Frame = +1
Query: 109 MSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSNMT*RR 273
+ IQ + +DPFA+A S ++ +H+RIQQRNG+K+LTTVQGL + R
Sbjct: 4 LDIQIPSAYDPFAEAKDSDAPGAKEN-IHIRIQQRNGKKSLTTVQGLKKEYSYER 57
>At1g05530.1 68414.m00567 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 455
Score = 33.9 bits (74), Expect = 0.10
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Frame = +1
Query: 73 VSLKQRDPTFNRMSIQNLN--TF-DPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLT 234
+S+ R N +++NL+ TF D F D + S+ DDVQ+ LVH +RNG K L+
Sbjct: 41 LSVIHRSMIPNHNNVENLSFLTFSDGFDDGVISNTDDVQNRLVHF---ERNGDKALS 94
>At5g28530.1 68418.m03478 far-red impaired responsive protein,
putative similar to far-red impaired response protein
FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282;
contains Pfam:PF03101 domain: FAR1 family
Length = 685
Score = 30.7 bits (66), Expect = 0.97
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Frame = +3
Query: 237 GARPFLEYDLKKIVRACKKE------FACKVRSWSTRSTARCCSFRATSERIF 377
G PF+E D++ VRACKK F + R T CC A + F
Sbjct: 208 GQLPFIEKDVRNFVRACKKSVQENDAFMTEKRESDTLELLECCKGLAERDMDF 260
>At4g18160.1 68417.m02698 outward rectifying potassium channel,
putative (KCO6) similar to kco1 [Arabidopsis thaliana]
gi|2230761|emb|CAA69158; member of the 2 pore, 4
transmembrane (2P/4TM) K+ channel family, PMID:11500563
Length = 436
Score = 29.1 bits (62), Expect = 3.0
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Frame = -2
Query: 360 SP*SCSTS---PYSGCSTTVPCTRTPSCMP----ARSSSGHIRGKALHRSQRLTPVSLLD 202
SP S ST+ P+S ST P P P + +S H +G ALHRS+ +++++
Sbjct: 72 SPSSSSTAVNNPFSDSSTLDPLLPPPPPQPEPWLSDQTSSHCQGHALHRSKTAPAMAVIN 131
>At3g44920.1 68416.m04839 cation/hydrogen exchanger, putative
(CHX11) monovalent cation:proton antiporter family 2
(CPA2) member, PMID:11500563
Length = 671
Score = 28.7 bits (61), Expect = 3.9
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = -1
Query: 385 PLA-NILSLVALKLQHLAVLRVLHDRTL---HANSFLHARTIFFRSYSRKGLAP*SASYA 218
P+A +L LV L Q ++ V HD+ L H NS++H + FR + ++ L S +
Sbjct: 383 PIAVTVLHLVKLVGQINPII-VSHDKKLKRLHKNSYIHTANLAFRQFMQESLE--SVTVT 439
Query: 217 RFVAGYGRGLNH 182
F A L H
Sbjct: 440 TFTAFSHENLMH 451
>At1g27900.1 68414.m03419 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 700
Score = 27.9 bits (59), Expect = 6.8
Identities = 19/94 (20%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
Frame = +3
Query: 36 SDSYIVECVVSQRFVETKRPYVQSYVHPESQHIRPIRRCYQKLGGRRSRWFSPRP---YP 206
+D + VV + T RP++++ + + PI+R +KL R+ P P P
Sbjct: 604 NDGMMPNYVVYHELISTTRPFMRNVCAVDMAWVAPIKRKIEKLNVRKLSG-GPAPSFKVP 662
Query: 207 ATKRA*DADYGARPFLEYDLKKIVRACKKEFACK 308
K + P + +++ + A ++ F +
Sbjct: 663 EEKTELSKNNAETPAVSENVESRIEAARERFLAR 696
>At1g75990.1 68414.m08824 26S proteasome regulatory subunit S3,
putative (RPN3) similar to 26S proteasome regulatory
subunit S3 SP:P93768 [Nicotiana tabacum (Common
tobacco)]
Length = 487
Score = 27.5 bits (58), Expect = 9.0
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Frame = +1
Query: 13 RAHNSALSVTVILLSA*YRSVSLKQRDPTFNRMSIQN------LNTFDPFADAIKSSEDD 174
R HN + + ++ R++S+ +++R+S+Q+ LN+ +P ADA
Sbjct: 342 RTHNLIVRLRHNVIRTGLRNISI-----SYSRISLQDVAQKLRLNSANPVADAESIVAKA 396
Query: 175 VQDGLVHVRIQQRNG 219
++DG + I +NG
Sbjct: 397 IRDGAIDATIDHKNG 411
>At1g63900.1 68414.m07235 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 343
Score = 27.5 bits (58), Expect = 9.0
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 582 VPCDFLCCIKYCKSYILSPP 641
VPC +CC C S++ S P
Sbjct: 309 VPCGHMCCCTACSSHLTSCP 328
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,342,680
Number of Sequences: 28952
Number of extensions: 289368
Number of successful extensions: 830
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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