Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00025
(774 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g54290.1 68414.m06189 eukaryotic translation initiation facto... 82 3e-16
At5g54760.1 68418.m06820 eukaryotic translation initiation facto... 82 5e-16
At4g27130.1 68417.m03899 eukaryotic translation initiation facto... 82 5e-16
At5g54940.2 68418.m06843 eukaryotic translation initiation facto... 77 1e-14
At5g54940.1 68418.m06842 eukaryotic translation initiation facto... 77 1e-14
At1g05530.1 68414.m00567 UDP-glucoronosyl/UDP-glucosyl transfera... 34 0.12
At5g28530.1 68418.m03478 far-red impaired responsive protein, pu... 32 0.49
At5g05965.1 68418.m00660 hypothetical protein 29 2.6
At1g63430.1 68414.m07173 leucine-rich repeat transmembrane prote... 28 7.9
At1g34575.1 68414.m04297 FAD-binding domain-containing protein s... 28 7.9
>At1g54290.1 68414.m06189 eukaryotic translation initiation factor
SUI1, putative similar to P|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 113
Score = 82.2 bits (194), Expect = 3e-16
Identities = 34/61 (55%), Positives = 47/61 (77%)
Frame = +3
Query: 255 EYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHG 434
EY KI++ KKEF CNGTVV+ E G+V+QLQGDQR+N+ +L ++GLVK + +K+HG
Sbjct: 53 EYSYSKILKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHG 112
Query: 435 F 437
F
Sbjct: 113 F 113
Score = 53.2 bits (122), Expect = 2e-07
Identities = 25/47 (53%), Positives = 30/47 (63%)
Frame = +1
Query: 109 MSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGL 249
+ +Q FDPFADA VH+R+QQRNGRK+LTTVQGL
Sbjct: 4 LEVQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGL 50
>At5g54760.1 68418.m06820 eukaryotic translation initiation factor
SUI1, putative similar to SP|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 113
Score = 81.8 bits (193), Expect = 5e-16
Identities = 34/61 (55%), Positives = 47/61 (77%)
Frame = +3
Query: 255 EYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHG 434
EY KI++ KKEF CNGTVV+ E G+V+QLQGDQR+N+ +L ++GLVK + +K+HG
Sbjct: 53 EYSYTKILKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHG 112
Query: 435 F 437
F
Sbjct: 113 F 113
Score = 51.2 bits (117), Expect = 7e-07
Identities = 24/39 (61%), Positives = 27/39 (69%)
Frame = +1
Query: 133 FDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGL 249
FDPFADA VH+R+QQRNGRK+LTTVQGL
Sbjct: 12 FDPFADANVEDSGAGTKEYVHIRVQQRNGRKSLTTVQGL 50
>At4g27130.1 68417.m03899 eukaryotic translation initiation factor
SUI1, putative similar to SP|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 113
Score = 81.8 bits (193), Expect = 5e-16
Identities = 34/61 (55%), Positives = 47/61 (77%)
Frame = +3
Query: 255 EYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHG 434
EY KI++ KKEF CNGTVV+ E G+V+QLQGDQR+N+ +L ++GLVK + +K+HG
Sbjct: 53 EYSYTKILKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHG 112
Query: 435 F 437
F
Sbjct: 113 F 113
Score = 51.6 bits (118), Expect = 6e-07
Identities = 24/39 (61%), Positives = 27/39 (69%)
Frame = +1
Query: 133 FDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGL 249
FDPFADA VH+R+QQRNGRK+LTTVQGL
Sbjct: 12 FDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGL 50
>At5g54940.2 68418.m06843 eukaryotic translation initiation factor
SUI1, putative similar to SP|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 112
Score = 77.0 bits (181), Expect = 1e-14
Identities = 29/61 (47%), Positives = 47/61 (77%)
Frame = +3
Query: 255 EYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHG 434
EY ++I++ KK+F CNG VV+ E G+++QLQGDQR+ + Q+L ++G+ K +Q+K+HG
Sbjct: 52 EYSYERILKDLKKDFCCNGNVVQDKELGKIIQLQGDQRKKVSQFLVQTGIAKKDQIKIHG 111
Query: 435 F 437
F
Sbjct: 112 F 112
Score = 52.0 bits (119), Expect = 4e-07
Identities = 25/55 (45%), Positives = 36/55 (65%)
Frame = +1
Query: 109 MSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSNMT*RR 273
+ IQ + +DPFA+A S ++ +H+RIQQRNG+K+LTTVQGL + R
Sbjct: 4 LDIQIPSAYDPFAEAKDSDAPGAKEN-IHIRIQQRNGKKSLTTVQGLKKEYSYER 57
>At5g54940.1 68418.m06842 eukaryotic translation initiation factor
SUI1, putative similar to SP|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 112
Score = 77.0 bits (181), Expect = 1e-14
Identities = 29/61 (47%), Positives = 47/61 (77%)
Frame = +3
Query: 255 EYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHG 434
EY ++I++ KK+F CNG VV+ E G+++QLQGDQR+ + Q+L ++G+ K +Q+K+HG
Sbjct: 52 EYSYERILKDLKKDFCCNGNVVQDKELGKIIQLQGDQRKKVSQFLVQTGIAKKDQIKIHG 111
Query: 435 F 437
F
Sbjct: 112 F 112
Score = 52.0 bits (119), Expect = 4e-07
Identities = 25/55 (45%), Positives = 36/55 (65%)
Frame = +1
Query: 109 MSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSNMT*RR 273
+ IQ + +DPFA+A S ++ +H+RIQQRNG+K+LTTVQGL + R
Sbjct: 4 LDIQIPSAYDPFAEAKDSDAPGAKEN-IHIRIQQRNGKKSLTTVQGLKKEYSYER 57
>At1g05530.1 68414.m00567 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 455
Score = 33.9 bits (74), Expect = 0.12
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Frame = +1
Query: 73 VSLKQRDPTFNRMSIQNLN--TF-DPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLT 234
+S+ R N +++NL+ TF D F D + S+ DDVQ+ LVH +RNG K L+
Sbjct: 41 LSVIHRSMIPNHNNVENLSFLTFSDGFDDGVISNTDDVQNRLVHF---ERNGDKALS 94
>At5g28530.1 68418.m03478 far-red impaired responsive protein,
putative similar to far-red impaired response protein
FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282;
contains Pfam:PF03101 domain: FAR1 family
Length = 685
Score = 31.9 bits (69), Expect = 0.49
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 237 GARPFLEYDLKKIVRACKKEFACNGTVVEHPEYGEVLQL 353
G PF+E D++ VRACKK N + + L+L
Sbjct: 208 GQLPFIEKDVRNFVRACKKSVQENDAFMTEKRESDTLEL 246
>At5g05965.1 68418.m00660 hypothetical protein
Length = 131
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/58 (32%), Positives = 24/58 (41%)
Frame = +1
Query: 127 NTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSNMT*RRSCGHARRSS 300
N F P A SS + D + + ++ G T VQG S T RS R SS
Sbjct: 19 NLFGPKGSASASSCSTILDSIFPPPVARKKGSHTAPEVQGNISQATDERSSHEKRESS 76
>At1g63430.1 68414.m07173 leucine-rich repeat transmembrane protein
kinase, putative contains Pfam profiles: PF00069
Eukaryotic protein kinase domain, PF00560 Leucine Rich
Repeat; contains 1 predicted transmembrane domain
Length = 664
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 261 DLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQRENI 377
++ R E+A NGT+ EH YGE + +R I
Sbjct: 429 EISPFTRMLVFEYASNGTLYEHLHYGEAALVSWARRMKI 467
>At1g34575.1 68414.m04297 FAD-binding domain-containing protein
similar to SP|P30986 reticuline oxidase precursor
(Berberine-bridge-forming enzyme) (BBE)
(Tetrahydroprotoberberine synthase) [Eschscholzia
californica]; contains PF01565 FAD binding domain
Length = 527
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = -3
Query: 406 TKPDLVSHWQIFSRWSP*SCSTSPYSGCSTTVPLHANSFLH-ARTIFFRSYSRKGLAP 236
+KP L S ++I S S + +PY G + +P +F H A +F YS P
Sbjct: 380 SKPGLESIFKILSENENVSMAWNPYGGRMSEIPATETAFPHRAGNMFKIQYSSNWFVP 437
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,821,154
Number of Sequences: 28952
Number of extensions: 321307
Number of successful extensions: 861
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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