Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00022
         (509 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47930.1 68418.m05921 40S ribosomal protein S27 (RPS27D)           138   2e-33
At3g61110.1 68416.m06839 40S ribosomal protein S27 (ARS27A) iden...   135   1e-32
At2g45710.1 68415.m05685 40S ribosomal protein S27 (RPS27A)           130   7e-31
At2g44870.1 68415.m05586 expressed protein                             30   0.79 
At5g39770.1 68418.m04817 repair endonuclease family protein cont...    30   1.0  
At4g21100.1 68417.m03051 UV-damaged DNA-binding protein, putativ...    27   7.3  
At4g02120.1 68417.m00283 CTP synthase, putative / UTP--ammonia l...    27   7.3  
At3g56410.2 68416.m06274 expressed protein                             27   9.7  
At3g56410.1 68416.m06273 expressed protein                             27   9.7  

>At5g47930.1 68418.m05921 40S ribosomal protein S27 (RPS27D)
          Length = 84

 Score =  138 bits (335), Expect = 2e-33
 Identities = 59/78 (75%), Positives = 66/78 (84%)
 Frame = +3

Query: 21  IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 200
           IDLLHP P  E+RKHKLKRLV  PNS+FMDVKC GC+ ITTVFSH+Q VVVC  C T+LC
Sbjct: 7   IDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLC 66

Query: 201 QPTGGRARLTEGCSFRRK 254
           QPTGG+ARL EGCSFR+K
Sbjct: 67  QPTGGKARLQEGCSFRKK 84


>At3g61110.1 68416.m06839 40S ribosomal protein S27 (ARS27A)
           identical to cDNA ribosomal protein S27 (ARS27A)
           GI:4193381
          Length = 86

 Score =  135 bits (327), Expect = 1e-32
 Identities = 59/78 (75%), Positives = 66/78 (84%)
 Frame = +3

Query: 21  IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 200
           IDLL+P    E+RKHKLKRLV  PNS+FMDVKC GC+ ITTVFSH+Q VVVC  C TILC
Sbjct: 7   IDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTILC 66

Query: 201 QPTGGRARLTEGCSFRRK 254
           QPTGG+A+LTEGCSFRRK
Sbjct: 67  QPTGGKAKLTEGCSFRRK 84


>At2g45710.1 68415.m05685 40S ribosomal protein S27 (RPS27A)
          Length = 84

 Score =  130 bits (313), Expect = 7e-31
 Identities = 55/78 (70%), Positives = 65/78 (83%)
 Frame = +3

Query: 21  IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 200
           IDLL+P    E+RKHKLKRLV  PNS+FMDVKC GC+ ITTVFSH+Q VV+C  C T+LC
Sbjct: 7   IDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGNCQTLLC 66

Query: 201 QPTGGRARLTEGCSFRRK 254
            PTGG+A+LTEGCSFR+K
Sbjct: 67  TPTGGKAKLTEGCSFRKK 84


>At2g44870.1 68415.m05586 expressed protein
          Length = 248

 Score = 30.3 bits (65), Expect = 0.79
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +3

Query: 93  NSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTG 212
           N++ +  +CP C +      +  +++ C GC  I+ QP G
Sbjct: 175 NNFVIKGECPACKR--QFIGYKNQIIRCEGCGNIVWQPQG 212


>At5g39770.1 68418.m04817 repair endonuclease family protein
           contains Pfam PF02732 : ERCC4 domain; similar to MUS81
           endonuclease (GI:16755674) [Mus musculus]; similar to
           repair endonuclease (TIGR:At5g41150) [Arabidopsis
           thaliana]
          Length = 1242

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 357 WIHCSELEKYHSIIQLEKKS*N*IGLCPGLKC*CFFF*KNI 235
           W+HC + E Y S+++ +        L  GL C CF   KN+
Sbjct: 339 WVHCGQQE-YASVVETDSTYFLGAALVSGLPCGCFEIDKNM 378


>At4g21100.1 68417.m03051 UV-damaged DNA-binding protein, putative
           similar to UV-damaged DNA binding protein (GI:12082087)
           [Oryza sativa] and damage-specific DNA binding protein
           1, Homo sapiens, PIR2:I38908; contains Pfam PF03178 :
           CPSF A subunit region
          Length = 1088

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
 Frame = +3

Query: 6   TMPLAIDLLHPSPASERRKHKLKRLVPHPN-----SYFMDVKCPGCYKITTVFSHAQRVV 170
           T   AI  L   P++E  +    RL+   +     SY +D    GC  ++  F+  + V 
Sbjct: 724 TRTFAISCLRNEPSAEESESHFVRLLDAQSFEFLSSYPLDAFECGCSILSCSFTDDKNVY 783

Query: 171 VCAGCSTIL---CQPTGGR 218
            C G + +L    +PT GR
Sbjct: 784 YCVGTAYVLPEENEPTKGR 802


>At4g02120.1 68417.m00283 CTP synthase, putative / UTP--ammonia
           ligase, putative similar to SP|P17812 CTP synthase (EC
           6.3.4.2) (UTP--ammonia ligase) {Homo sapiens}; contains
           Pfam profile PF00117: glutamine amidotransferase class-I
          Length = 556

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 140 CNLVTARALNIHEIRVRMWH*PLKL 66
           C++  A  LNIH++   +WH PL L
Sbjct: 234 CHVAAANILNIHDV-PNIWHVPLLL 257


>At3g56410.2 68416.m06274 expressed protein
          Length = 1535

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 75  RLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTIL 197
           R VP  +S    V+CP C+K+      A     C GC +IL
Sbjct: 55  RTVPGLSSQSRIVRCPKCHKLLQEPLDATS-YKCGGCDSIL 94


>At3g56410.1 68416.m06273 expressed protein
          Length = 1488

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 75  RLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTIL 197
           R VP  +S    V+CP C+K+      A     C GC +IL
Sbjct: 8   RTVPGLSSQSRIVRCPKCHKLLQEPLDATS-YKCGGCDSIL 47


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,311,445
Number of Sequences: 28952
Number of extensions: 199275
Number of successful extensions: 456
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)