Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00010
         (717 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g21370.2 68415.m02542 xylulose kinase, putative similar to xy...    30   1.3  
At2g21370.1 68415.m02543 xylulose kinase, putative similar to xy...    30   1.3  
At4g03200.1 68417.m00437 expressed protein contains Pfam PF03190...    29   3.1  
At5g56200.1 68418.m07012 zinc finger (C2H2 type) family protein ...    29   4.1  

>At2g21370.2 68415.m02542 xylulose kinase, putative similar to
           xylulose kinase (Xylulokinase) [Bacillus subtilis]
           Swiss-Prot:P39211
          Length = 385

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 167 DCEVCVKTVEKFAATLSDDVKKDPKKIEA-GSKSSVKVQRTKKID 298
           DC VC  T +  AA L+    +  K + + GS  ++K+  TK++D
Sbjct: 176 DCIVCTGTTDSIAAFLAARATEPGKAVTSLGSTLAIKLLSTKRVD 220


>At2g21370.1 68415.m02543 xylulose kinase, putative similar to
           xylulose kinase (Xylulokinase) [Bacillus subtilis]
           Swiss-Prot:P39211
          Length = 478

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 167 DCEVCVKTVEKFAATLSDDVKKDPKKIEA-GSKSSVKVQRTKKID 298
           DC VC  T +  AA L+    +  K + + GS  ++K+  TK++D
Sbjct: 269 DCIVCTGTTDSIAAFLAARATEPGKAVTSLGSTLAIKLLSTKRVD 313


>At4g03200.1 68417.m00437 expressed protein contains Pfam PF03190:
           Protein of unknown function, DUF255
          Length = 818

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 319 LEESATGILGELSKPLSWSMPADKICEKLKKKDAQICDLRFDKQID 456
           L +S T  + ELSK LS S  ADK+ + + ++    C  +  +  D
Sbjct: 230 LVKSGTYAIEELSKALSASTGADKLSDGISREAVSTCAKQLSRSYD 275


>At5g56200.1 68418.m07012 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 493

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/65 (24%), Positives = 26/65 (40%)
 Frame = +2

Query: 116 LLFLATAVQVVLSLREGDCEVCVKTVEKFAATLSDDVKKDPKKIEAGSKSSVKVQRTKKI 295
           LLFLAT  +   +L   +        EK+   +    KK  +  E   +SS       ++
Sbjct: 263 LLFLATTAEAAANLNVAETSASRSVEEKYLEMVKKRKKKQKRLSEMEKESSTSTHHDHQL 322

Query: 296 DFVTI 310
           D V +
Sbjct: 323 DQVVV 327


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,218,470
Number of Sequences: 28952
Number of extensions: 277673
Number of successful extensions: 666
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)