Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00009
(689 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g54560.1 68416.m06037 histone H2A.F/Z identical to GI:2407800 97 1e-20
At2g38810.3 68415.m04767 histone H2A, putative strong similarity... 97 1e-20
At2g38810.2 68415.m04766 histone H2A, putative strong similarity... 97 1e-20
At2g38810.1 68415.m04765 histone H2A, putative strong similarity... 97 1e-20
At1g52740.1 68414.m05962 histone H2A, putative similar to histon... 95 3e-20
At4g13570.1 68417.m02114 histone H2A, putative similar to histon... 81 7e-16
At5g54640.1 68418.m06803 histone H2A identical to histone H2A Ar... 67 9e-12
At4g27230.1 68417.m03910 histone H2A, putative strong similarity... 67 9e-12
At3g20670.1 68416.m02616 histone H2A, putative strong similarity... 67 9e-12
At1g51060.1 68414.m05740 histone H2A, putative similar to histon... 66 2e-11
At1g54690.1 68414.m06235 histone H2A, putative strong similarity... 64 6e-11
At1g08880.1 68414.m00988 histone H2A, putative Strong similarity... 64 6e-11
At5g02560.1 68418.m00190 histone H2A, putative similar to histon... 62 3e-10
At5g59870.1 68418.m07507 histone H2A, putative similar to histon... 60 2e-09
At5g27670.1 68418.m03317 histone H2A, putative similar to histon... 59 3e-09
At1g22960.1 68414.m02869 pentatricopeptide (PPR) repeat-containi... 33 0.24
At5g10000.1 68418.m01158 ferredoxin family protein similar to Fe... 30 1.3
At5g12970.1 68418.m01487 C2 domain-containing protein contains I... 29 2.9
At4g19980.1 68417.m02925 expressed protein ; expression support... 29 2.9
At3g57880.1 68416.m06452 C2 domain-containing protein contains I... 28 5.1
At1g51570.1 68414.m05804 C2 domain-containing protein contains I... 28 5.1
At1g28490.1 68414.m03503 syntaxin 61 (SYP61) / osmotic stess-sen... 27 8.9
>At3g54560.1 68416.m06037 histone H2A.F/Z identical to GI:2407800
Length = 136
Score = 97.1 bits (231), Expect = 1e-20
Identities = 45/53 (84%), Positives = 48/53 (90%)
Frame = +2
Query: 239 VGGKCAKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 397
+ G +KDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K
Sbjct: 80 LAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 132
Score = 88.2 bits (209), Expect = 4e-18
Identities = 41/50 (82%), Positives = 46/50 (92%)
Frame = +3
Query: 111 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNALK 260
+QFPVGRIHR LK R ++HGRVGATAAVY+A+ILEYLTAEVLELAGNA K
Sbjct: 37 IQFPVGRIHRQLKTRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASK 86
>At2g38810.3 68415.m04767 histone H2A, putative strong similarity to
histone H2A.F/Z Arabidopsis thaliana GI:2407800;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 96.7 bits (230), Expect = 1e-20
Identities = 44/53 (83%), Positives = 48/53 (90%)
Frame = +2
Query: 239 VGGKCAKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 397
+ G +KDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSL+ K
Sbjct: 80 LAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLVNK 132
Score = 88.2 bits (209), Expect = 4e-18
Identities = 41/50 (82%), Positives = 46/50 (92%)
Frame = +3
Query: 111 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNALK 260
+QFPVGRIHR LK R ++HGRVGATAAVY+A+ILEYLTAEVLELAGNA K
Sbjct: 37 IQFPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASK 86
>At2g38810.2 68415.m04766 histone H2A, putative strong similarity to
histone H2A.F/Z Arabidopsis thaliana GI:2407800;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 96.7 bits (230), Expect = 1e-20
Identities = 44/53 (83%), Positives = 48/53 (90%)
Frame = +2
Query: 239 VGGKCAKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 397
+ G +KDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSL+ K
Sbjct: 80 LAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLVNK 132
Score = 88.2 bits (209), Expect = 4e-18
Identities = 41/50 (82%), Positives = 46/50 (92%)
Frame = +3
Query: 111 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNALK 260
+QFPVGRIHR LK R ++HGRVGATAAVY+A+ILEYLTAEVLELAGNA K
Sbjct: 37 IQFPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASK 86
>At2g38810.1 68415.m04765 histone H2A, putative strong similarity to
histone H2A.F/Z Arabidopsis thaliana GI:2407800;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 96.7 bits (230), Expect = 1e-20
Identities = 44/53 (83%), Positives = 48/53 (90%)
Frame = +2
Query: 239 VGGKCAKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 397
+ G +KDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSL+ K
Sbjct: 80 LAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLVNK 132
Score = 88.2 bits (209), Expect = 4e-18
Identities = 41/50 (82%), Positives = 46/50 (92%)
Frame = +3
Query: 111 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNALK 260
+QFPVGRIHR LK R ++HGRVGATAAVY+A+ILEYLTAEVLELAGNA K
Sbjct: 37 IQFPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASK 86
>At1g52740.1 68414.m05962 histone H2A, putative similar to histone
H2A.F/Z Arabidopsis thaliana GI:2407800; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 134
Score = 95.5 bits (227), Expect = 3e-20
Identities = 44/53 (83%), Positives = 48/53 (90%)
Frame = +2
Query: 239 VGGKCAKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 397
+ G +KDLKVKRI+PRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K
Sbjct: 78 LAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 130
Score = 90.6 bits (215), Expect = 8e-19
Identities = 43/50 (86%), Positives = 47/50 (94%)
Frame = +3
Query: 111 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNALK 260
LQFPVGR+HR LK R+T+HGRVGATAAVY+AAILEYLTAEVLELAGNA K
Sbjct: 35 LQFPVGRVHRLLKTRSTAHGRVGATAAVYTAAILEYLTAEVLELAGNASK 84
>At4g13570.1 68417.m02114 histone H2A, putative similar to histone
H2A.F/Z from Arabidopsis thaliana GI:2407800, histone
H2A.F/Z Strongylocentrotus purpuratus SP|P08991, histone
H2A variant Drosophila melanogaster SP|P08985; contains
Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 118
Score = 81.0 bits (191), Expect = 7e-16
Identities = 37/42 (88%), Positives = 39/42 (92%)
Frame = +2
Query: 254 AKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIH 379
+KDLKVKRITPRHLQLAIRGDEELD+LIK TI GG VIPHIH
Sbjct: 77 SKDLKVKRITPRHLQLAIRGDEELDTLIKGTIIGGSVIPHIH 118
Score = 62.1 bits (144), Expect = 3e-10
Identities = 29/48 (60%), Positives = 34/48 (70%)
Frame = +3
Query: 117 FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNALK 260
F V RIH+ LKNR ++H VGAT VY +ILEYLT EVL+LA N K
Sbjct: 31 FQVARIHKQLKNRVSAHSSVGATDVVYMTSILEYLTTEVLQLAENTSK 78
>At5g54640.1 68418.m06803 histone H2A identical to histone H2A
Arabidopsis thaliana GI:7595337
Length = 130
Score = 67.3 bits (157), Expect = 9e-12
Identities = 32/61 (52%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Frame = +2
Query: 239 VGGKCAKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGGPGA 415
+ G A+D K RI PRH+QLA+R DEEL L+ TIA GGV+P+IH L+ KK G
Sbjct: 67 LAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGASK 126
Query: 416 P 418
P
Sbjct: 127 P 127
Score = 61.3 bits (142), Expect = 6e-10
Identities = 34/50 (68%), Positives = 37/50 (74%)
Frame = +3
Query: 111 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNALK 260
LQFPVGRI R LK + RVGA A VY AA+LEYL AEVLELAGNA +
Sbjct: 25 LQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAAR 73
>At4g27230.1 68417.m03910 histone H2A, putative strong similarity to
histone H2A Arabidopsis thaliana GI:7595337, Triticum
aestivum GI:536892, Picea abies SP|P35063; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 131
Score = 67.3 bits (157), Expect = 9e-12
Identities = 32/61 (52%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Frame = +2
Query: 239 VGGKCAKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGGPGA 415
+ G A+D K RI PRH+QLA+R DEEL L+ TIA GGV+P+IH L+ KK G
Sbjct: 67 LAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGSSK 126
Query: 416 P 418
P
Sbjct: 127 P 127
Score = 61.3 bits (142), Expect = 6e-10
Identities = 34/50 (68%), Positives = 37/50 (74%)
Frame = +3
Query: 111 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNALK 260
LQFPVGRI R LK + RVGA A VY AA+LEYL AEVLELAGNA +
Sbjct: 25 LQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAAR 73
>At3g20670.1 68416.m02616 histone H2A, putative strong similarity to
histone H2A GB:AAF64418 GI:7595337 from Arabidopsis
thaliana, Triticum aestivum GI:536892; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 132
Score = 67.3 bits (157), Expect = 9e-12
Identities = 32/61 (52%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Frame = +2
Query: 239 VGGKCAKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGGPGA 415
+ G A+D K RI PRH+QLA+R DEEL L+ TIA GGV+P+IH L+ KK G
Sbjct: 67 LAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPKKAGASK 126
Query: 416 P 418
P
Sbjct: 127 P 127
Score = 63.7 bits (148), Expect = 1e-10
Identities = 35/50 (70%), Positives = 38/50 (76%)
Frame = +3
Query: 111 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNALK 260
LQFPVGRI R LKN + RVGA A VY AA+LEYL AEVLELAGNA +
Sbjct: 25 LQFPVGRIARFLKNGKYAT-RVGAGAPVYLAAVLEYLAAEVLELAGNAAR 73
>At1g51060.1 68414.m05740 histone H2A, putative similar to histone
H2A GI:7595337 from Arabidopsis thaliana, Triticum
aestivum GI:536892, Picea abies SP|P35063; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 132
Score = 66.5 bits (155), Expect = 2e-11
Identities = 32/61 (52%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Frame = +2
Query: 239 VGGKCAKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGGPGA 415
+ G A+D K RI PRH+QLA+R DEEL L+ TIA GGV+P+IH L+ KK G
Sbjct: 67 LAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGASK 126
Query: 416 P 418
P
Sbjct: 127 P 127
Score = 62.1 bits (144), Expect = 3e-10
Identities = 34/50 (68%), Positives = 37/50 (74%)
Frame = +3
Query: 111 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNALK 260
LQFPVGRI R LK + RVGA A VY AA+LEYL AEVLELAGNA +
Sbjct: 25 LQFPVGRIARFLKKGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAAR 73
>At1g54690.1 68414.m06235 histone H2A, putative strong similarity to
histone H2A GI:3204129 SP|O65759 from Cicer arietinum,
Picea abies SP|P35063; contains Pfam profile PF00125
Core histone H2A/H2B/H3/H4
Length = 142
Score = 64.5 bits (150), Expect = 6e-11
Identities = 30/57 (52%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Frame = +2
Query: 239 VGGKCAKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGG 406
+ G A+D K RI PRH+QLA+R DEEL L+ TIA GGV+P+IH++L+ K G
Sbjct: 73 LAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVG 129
Score = 60.1 bits (139), Expect = 1e-09
Identities = 33/50 (66%), Positives = 37/50 (74%)
Frame = +3
Query: 111 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNALK 260
LQFPVGRI R LK + RVGA A VY +A+LEYL AEVLELAGNA +
Sbjct: 31 LQFPVGRIARFLKAGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAAR 79
>At1g08880.1 68414.m00988 histone H2A, putative Strong similarity to
histone H2A Cicer arietinum SP|O65759, Picea abies
SP|P35063; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4; ESTs gb|ATTS3874,gb|T46627,gb|T14194 come
from this gene
Length = 142
Score = 64.5 bits (150), Expect = 6e-11
Identities = 30/57 (52%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Frame = +2
Query: 239 VGGKCAKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGG 406
+ G A+D K RI PRH+QLA+R DEEL L+ TIA GGV+P+IH++L+ K G
Sbjct: 73 LAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVG 129
Score = 61.3 bits (142), Expect = 6e-10
Identities = 33/50 (66%), Positives = 38/50 (76%)
Frame = +3
Query: 111 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNALK 260
LQFPVGRI R LK+ + RVGA A VY +A+LEYL AEVLELAGNA +
Sbjct: 31 LQFPVGRIARFLKSGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAAR 79
>At5g02560.1 68418.m00190 histone H2A, putative similar to histone
H2A from Pisum sativum SP|P25470, Zea mays SP|P40280,
Petroselinum crispum SP|P19177; contains Pfam profile
PF00125 Core histone H2A/H2B/H3/H4
Length = 153
Score = 62.5 bits (145), Expect = 3e-10
Identities = 34/50 (68%), Positives = 37/50 (74%)
Frame = +3
Query: 111 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNALK 260
LQFPVGRI R+LK S RVG A VY AA+LEYL AEVLELAGNA +
Sbjct: 33 LQFPVGRIGRYLKKGRYSK-RVGTGAPVYLAAVLEYLAAEVLELAGNAAR 81
Score = 58.8 bits (136), Expect = 3e-09
Identities = 30/60 (50%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Frame = +2
Query: 239 VGGKCAKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKKGGPGA 415
+ G A+D K RI PRH+ LA+R DEEL +L+K TIA GGV+P+I+ L+ KK A
Sbjct: 75 LAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPNINPILLPKKSEKAA 134
>At5g59870.1 68418.m07507 histone H2A, putative similar to histone
H2A Petroselinum crispum SP|P19177, Lycopersicon
esculentum SP|P25469, Zea mays SP|P40280; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 150
Score = 59.7 bits (138), Expect = 2e-09
Identities = 32/50 (64%), Positives = 36/50 (72%)
Frame = +3
Query: 111 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNALK 260
LQFPVGRI R LK + R+G A VY AA+LEYL AEVLELAGNA +
Sbjct: 33 LQFPVGRITRFLKKGRYAQ-RLGGGAPVYMAAVLEYLAAEVLELAGNAAR 81
Score = 58.0 bits (134), Expect = 5e-09
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Frame = +2
Query: 239 VGGKCAKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKK 400
+ G A+D K RI PRHL LAIR DEEL L+ TIA GGV+P+I+ L+ KK
Sbjct: 75 LAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPNINSVLLPKK 129
>At5g27670.1 68418.m03317 histone H2A, putative similar to histone
H2A Lycopersicon esculentum SP|P25469, Pisum sativum
SP|P25470, Petroselinum crispum SP|P19177; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 150
Score = 58.8 bits (136), Expect = 3e-09
Identities = 32/50 (64%), Positives = 37/50 (74%)
Frame = +3
Query: 111 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNALK 260
LQFPVGRI R+LK + R G+ A VY AA+LEYL AEVLELAGNA +
Sbjct: 34 LQFPVGRIARYLKKGRYAL-RYGSGAPVYLAAVLEYLAAEVLELAGNAAR 82
Score = 57.6 bits (133), Expect = 7e-09
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Frame = +2
Query: 239 VGGKCAKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKK 400
+ G A+D K RI PRHL LAIR DEEL L+ TIA GGV+P+I+ L+ KK
Sbjct: 76 LAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVLLPKK 130
>At1g22960.1 68414.m02869 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 718
Score = 32.7 bits (71), Expect = 0.24
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = -3
Query: 687 QVIVTMELHNIDIRQITINLLENGSVGKMQMREKRSQHLNMKQSG 553
++ + M+ NI+ ++T N+L NG +M E R H +M++SG
Sbjct: 259 KIWLEMKRRNIEFSEVTYNILINGFSKNGKMEEARRFHGDMRRSG 303
>At5g10000.1 68418.m01158 ferredoxin family protein similar to
Ferredoxin, chloroplast precursor from Arabidopsis
thaliana [SP|P16972]; contains Pfam profile: PF00111
2Fe-2S iron-sulfur cluster binding domains
Length = 148
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +2
Query: 206 YFGISYSRGFGVGGKCAKDL-KVKRITPRHLQLAIRGDEELDSLIKATIAG 355
YFG+S SRG G AK+ KVK I+P + I G+E+ L A AG
Sbjct: 35 YFGLSSSRG-NFGKVFAKESRKVKLISPEGEEQEIEGNEDCCILESAENAG 84
>At5g12970.1 68418.m01487 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 769
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 2/18 (11%)
Frame = +1
Query: 343 NYRWRRRHPTH--TQISH 390
N+RWR RHP H T++SH
Sbjct: 628 NFRWRPRHPPHMDTRLSH 645
>At4g19980.1 68417.m02925 expressed protein ; expression supported
by MPSS
Length = 127
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = +2
Query: 176 RSYGSSLFCRYFGISYSRGFGVGGKC 253
R GSSL CRY +SYS F GG C
Sbjct: 57 RRQGSSLQCRYDPMSYSLNFD-GGAC 81
>At3g57880.1 68416.m06452 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 773
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/17 (64%), Positives = 13/17 (76%), Gaps = 2/17 (11%)
Frame = +1
Query: 346 YRWRRRHPTH--TQISH 390
YRWR RHP H T++SH
Sbjct: 633 YRWRPRHPPHMDTRLSH 649
>At1g51570.1 68414.m05804 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 776
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/17 (64%), Positives = 13/17 (76%), Gaps = 2/17 (11%)
Frame = +1
Query: 346 YRWRRRHPTH--TQISH 390
YRWR RHP H T++SH
Sbjct: 636 YRWRPRHPPHMDTRLSH 652
>At1g28490.1 68414.m03503 syntaxin 61 (SYP61) / osmotic
stess-sensitive mutant 1 (OSM1) identical to SP|Q946Y7
Syntaxin 61 (AtSYP61) (Osmotic stess-sensitive mutant 1)
{Arabidopsis thaliana}; identical to cDNA syntaxin of
plants 61 (SYP61) GI:16041649
Length = 245
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 269 VKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKK 400
V+ + R + L + DEELD L K+ GGV IH L+ ++
Sbjct: 145 VQSESDRQMLLIKQQDEELDELSKSVQRIGGVGLTIHDELVAQE 188
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,004,304
Number of Sequences: 28952
Number of extensions: 287050
Number of successful extensions: 774
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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