Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00008
         (421 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79150.1 68414.m09229 expressed protein ; expression supporte...    31   0.24 
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea...    29   1.7  
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex...    28   3.0  
At5g10900.1 68418.m01265 calcineurin-like phosphoesterase family...    27   3.9  
At4g00700.1 68417.m00096 C2 domain-containing protein contains I...    27   3.9  
At5g26580.1 68418.m03186 MADS-box protein (AGL34) MADS box prote...    27   5.2  
At2g27980.1 68415.m03391 expressed protein                             27   5.2  
At5g04020.1 68418.m00382 calmodulin-binding protein-related (PIC...    27   6.8  
At3g23750.1 68416.m02986 leucine-rich repeat family protein / pr...    27   6.8  
At1g18950.1 68414.m02358 aminoacyl-tRNA synthetase family contai...    27   6.8  

>At1g79150.1 68414.m09229 expressed protein ; expression supported
           by MPSS
          Length = 495

 Score = 31.5 bits (68), Expect = 0.24
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +1

Query: 277 KLATLSAYEVFKDILPEYQIRHQDYSNVKLK 369
           KLA LS   VFKDI+P Y+IR      +++K
Sbjct: 228 KLALLSLLAVFKDIIPGYRIRLPTEKELEMK 258


>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
            family protein contains 5 WD-40 repeats (PF00400);
            similar to WDR protein, form B (GI:14970593) [Mus
            musculus]
          Length = 1589

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 14   ESSSDSGLLGTPEECDTPDREPADDNVISAVD 109
            ++  DSG    P   +TP RE AD+ +I + D
Sbjct: 1059 DAKGDSGCQSIPYSMNTPQREKADNQLIRSSD 1090


>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 956

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
 Frame = +2

Query: 17  SSSDSGLLGTPEECDTPDRE----PADDN 91
           SSS+SG + TP +  TPD E    P+D N
Sbjct: 840 SSSESGEISTPVQAPTPDSEDIEAPSDSN 868


>At5g10900.1 68418.m01265 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 600

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 8   HDESSSDSGLLGTPEECDTPDREPADDN 91
           H+ES + S LLG+ EE D  +R  A +N
Sbjct: 353 HEESPNPSLLLGSLEELDKIERRQAGEN 380


>At4g00700.1 68417.m00096 C2 domain-containing protein contains
            INTERPRO:IPR000008 C2 domain
          Length = 1006

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -3

Query: 395  YLYKARVSFFNLTFE*S*CLIWYSGRMSLNTSYADNVASFRTECRFNNHPSVSPP 231
            +LY A +  +N  F+       +   M    SYADNV S   +  F+  P+V  P
Sbjct: 855  FLYMAVIGMWNYRFKPR-----FPPHMDAKLSYADNVNSDELDEEFDTFPTVRAP 904


>At5g26580.1 68418.m03186 MADS-box protein (AGL34) MADS box protein
           EGM1, Eucalyptus grandis, EMBL:AF029975; contains Pfam
           profile PF00319: SRF-type transcription factor
           (DNA-binding and dimerisation domain)
          Length = 345

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +2

Query: 2   EDHDESSSDSGLLGTPEECDTPD 70
           E  DESSSDS +L T    DTP+
Sbjct: 163 ETGDESSSDSPILATTGVVDTPN 185


>At2g27980.1 68415.m03391 expressed protein
          Length = 1037

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +2

Query: 11  DESSSDSGLLGTPEECDTPDREPADDNVISAVDLMVARKEKLNNDKLRIGALCS 172
           +  S D GL    EE +  + E  DDNV+   D ++ + EK++   +    +CS
Sbjct: 113 ESMSEDKGL----EEKNDVEIENGDDNVVMNEDHLLEQTEKVSEKVIEAEKVCS 162


>At5g04020.1 68418.m00382 calmodulin-binding protein-related (PICBP)
           contains similarity to potato calmodulin-binding protein
           PCBP GI:17933110 from [Solanum tuberosum]
          Length = 1495

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 26/97 (26%), Positives = 44/97 (45%)
 Frame = +2

Query: 44  TPEECDTPDREPADDNVISAVDLMVARKEKLNNDKLRIGALCSSLLESPEKKLKNFFPIL 223
           T E  D+   E +DD+            E+L+   L I   CS    S +++ K+   I 
Sbjct: 63  TAESEDSSSSEMSDDS--RTYSKSSDENEELDQASLTI---CSERPRSVKRRAKSK-SIS 116

Query: 224 YLMEERLKDGY*TCTLYGNWQRYQRMKCLKTSSRNTR 334
            +   ++     T TLYG  QR ++M+ +K  + N+R
Sbjct: 117 RISSMKVLRRQSTRTLYGAGQRLKKMRSMKRLTSNSR 153


>At3g23750.1 68416.m02986 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 928

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = +1

Query: 175 FARESREKVKKFL-SYPVSNGGETEGWLLNLHSVRKLATLSA 297
           F R   EKV K L S  VSNGG   G   N H       L++
Sbjct: 506 FNRTDPEKVGKILVSDAVSNGGSGNGGYANGHGANNFNALNS 547


>At1g18950.1 68414.m02358 aminoacyl-tRNA synthetase family contains
           aminoacyl-transfer RNA synthetases class-II signature 1,
           PROSITE:PS00179
          Length = 766

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
 Frame = +2

Query: 65  PDREPADDNVISAVDLMVARKEKLNNDKLRIGALCS-------SLLESPEKKLK 205
           PDR PADD V    D  + ++E L   + R    C+         L++ E+KLK
Sbjct: 9   PDRSPADD-VAPVTDTKIPKEEPLTLRRTRPSRACTVRAQQRLQELQAAERKLK 61


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,591,570
Number of Sequences: 28952
Number of extensions: 163561
Number of successful extensions: 423
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)