SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00006
         (654 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B, pu...   117   8e-27
At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B, pu...   116   1e-26
At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B, pu...   116   1e-26
At2g47580.1 68415.m05937 small nuclear ribonucleoprotein U1A / s...   108   3e-24
At3g21215.1 68416.m02681 RNA-binding protein, putative contains ...    40   0.001
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ...    40   0.002
At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing ...    40   0.002
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t...    36   0.031
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative...    35   0.054
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ...    35   0.054
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)...    34   0.072
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ...    33   0.13 
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ...    33   0.13 
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS...    33   0.17 
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ...    33   0.17 
At5g42820.2 68418.m05216 U2 snRNP auxiliary factor small subunit...    33   0.22 
At5g42820.1 68418.m05215 U2 snRNP auxiliary factor small subunit...    33   0.22 
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein              32   0.29 
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ...    32   0.38 
At1g27650.1 68414.m03379 U2 snRNP auxiliary factor small subunit...    31   0.51 
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ...    31   0.67 
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ...    31   0.67 
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ...    31   0.67 
At1g36160.1 68414.m04495 acetyl-CoA carboxylase 1 (ACC1) nearly ...    30   1.2  
At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C) sim...    30   1.5  
At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) simil...    30   1.5  
At5g53180.1 68418.m06611 polypyrimidine tract-binding protein, p...    29   2.0  
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ...    29   2.0  
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t...    29   2.0  
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s...    29   2.7  
At4g08130.1 68417.m01337 hypothetical protein                          29   2.7  
At2g29220.1 68415.m03551 lectin protein kinase, putative similar...    29   2.7  
At5g23590.1 68418.m02768 DNAJ heat shock N-terminal domain-conta...    29   3.6  
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ...    28   4.7  
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ...    28   4.7  
At1g58190.1 68414.m06605 leucine-rich repeat family protein cont...    28   4.7  
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ...    28   4.7  
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ...    28   4.7  
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR...    28   4.7  
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR...    28   4.7  
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR...    28   4.7  
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t...    28   6.2  
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t...    28   6.2  
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR...    28   6.2  
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR...    28   6.2  
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ...    27   8.2  
At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D) ribos...    27   8.2  
At3g10420.2 68416.m01250 sporulation protein-related similar to ...    27   8.2  
At1g50230.1 68414.m05632 protein kinase family protein contains ...    27   8.2  

>At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B,
           putative / spliceosomal protein, putative similar to
           spliceosomal protein [Solanum tuberosum] GI:169589
          Length = 232

 Score =  117 bits (281), Expect = 8e-27
 Identities = 52/84 (61%), Positives = 70/84 (83%)
 Frame = +1

Query: 1   EELKKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMR 180
           EELK+SLY +FSQFG+ILD+VA+KT K+RGQA+V F E+++A  A+R MQ FPFYDKPMR
Sbjct: 24  EELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFSEVTAAGHAVRQMQNFPFYDKPMR 83

Query: 181 IQYSKIDSDIIAKSKGTFQERPKR 252
           +QY+K  SD +AK++GTF  + K+
Sbjct: 84  LQYAKAKSDCLAKAEGTFVPKDKK 107



 Score = 72.1 bits (169), Expect = 3e-13
 Identities = 31/64 (48%), Positives = 42/64 (65%)
 Frame = +3

Query: 321 HGIPGAGILNNVNAEQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIAF 500
           +G+P      +     PPN ILF+ NLP ET+ MML +LF Q+PGFKE+R++  +  IAF
Sbjct: 139 NGVPAPSFQPSGQETMPPNNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPGIAF 198

Query: 501 VELE 512
           VE E
Sbjct: 199 VEYE 202



 Score = 37.5 bits (83), Expect = 0.008
 Identities = 16/30 (53%), Positives = 24/30 (80%)
 Frame = +2

Query: 512 NEMQSAAAKEALQGFKITPTHAMKITFAKK 601
           +++Q++ A + LQGFKITP + M I+FAKK
Sbjct: 203 DDVQASIAMQPLQGFKITPQNPMVISFAKK 232


>At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B,
           putative / spliceosomal protein, putative non-consensus
           splice donor GC at exon 4; similar to spliceosomal
           protein (U2B) GI:169588 from [Solanum tuberosum]
          Length = 228

 Score =  116 bits (280), Expect = 1e-26
 Identities = 50/84 (59%), Positives = 71/84 (84%)
 Frame = +1

Query: 1   EELKKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMR 180
           EELK+SLY +FSQFG++LD+VA+KT K+RGQA+V+F E+++A+ A+R MQ FPFYDKPMR
Sbjct: 24  EELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTAASNAVRQMQNFPFYDKPMR 83

Query: 181 IQYSKIDSDIIAKSKGTFQERPKR 252
           IQY+K  SD + K++G+F  + K+
Sbjct: 84  IQYAKSKSDYVTKAEGSFVPKEKK 107



 Score = 67.7 bits (158), Expect = 6e-12
 Identities = 29/48 (60%), Positives = 37/48 (77%)
 Frame = +3

Query: 369 PPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVELE 512
           PPN ILF+ NLP ET+ MML +LF Q+PGFKE+R++  +  IAFVE E
Sbjct: 151 PPNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYE 198



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 17/30 (56%), Positives = 25/30 (83%)
 Frame = +2

Query: 512 NEMQSAAAKEALQGFKITPTHAMKITFAKK 601
           +++QS+ A +ALQGFKITP + M ++FAKK
Sbjct: 199 DDVQSSMAMQALQGFKITPQNPMVVSFAKK 228


>At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B,
           putative / spliceosomal protein, putative non-consensus
           splice donor GC at exon 4; similar to spliceosomal
           protein (U2B) GI:169588 from [Solanum tuberosum]
          Length = 229

 Score =  116 bits (280), Expect = 1e-26
 Identities = 50/84 (59%), Positives = 71/84 (84%)
 Frame = +1

Query: 1   EELKKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMR 180
           EELK+SLY +FSQFG++LD+VA+KT K+RGQA+V+F E+++A+ A+R MQ FPFYDKPMR
Sbjct: 24  EELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTAASNAVRQMQNFPFYDKPMR 83

Query: 181 IQYSKIDSDIIAKSKGTFQERPKR 252
           IQY+K  SD + K++G+F  + K+
Sbjct: 84  IQYAKSKSDYVTKAEGSFVPKEKK 107



 Score = 67.7 bits (158), Expect = 6e-12
 Identities = 29/48 (60%), Positives = 37/48 (77%)
 Frame = +3

Query: 369 PPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVELE 512
           PPN ILF+ NLP ET+ MML +LF Q+PGFKE+R++  +  IAFVE E
Sbjct: 152 PPNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYE 199



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 17/30 (56%), Positives = 25/30 (83%)
 Frame = +2

Query: 512 NEMQSAAAKEALQGFKITPTHAMKITFAKK 601
           +++QS+ A +ALQGFKITP + M ++FAKK
Sbjct: 200 DDVQSSMAMQALQGFKITPQNPMVVSFAKK 229


>At2g47580.1 68415.m05937 small nuclear ribonucleoprotein U1A /
           spliceosomal protein U1A / U1snRNP-specific protein
           identical to GB:Z49991 U1snRNP-specific protein
           [Arabidopsis thaliana]
          Length = 250

 Score =  108 bits (260), Expect = 3e-24
 Identities = 50/84 (59%), Positives = 64/84 (76%)
 Frame = +1

Query: 1   EELKKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMR 180
           +ELKKSL A+FSQFG+IL+I+A KT K +GQA+V+F    SA+ A+  M  FPFYDK MR
Sbjct: 32  DELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTESASTAIAKMNNFPFYDKEMR 91

Query: 181 IQYSKIDSDIIAKSKGTFQERPKR 252
           IQY+K  SD++AK+ GTF  R KR
Sbjct: 92  IQYAKTKSDVVAKADGTFVPREKR 115



 Score = 65.3 bits (152), Expect = 3e-11
 Identities = 32/59 (54%), Positives = 39/59 (66%)
 Frame = +3

Query: 330 PGAGILNNVNAEQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVE 506
           PG    N   A  PPN ILF+ NLP ET+ M+L MLF Q+ GFKEVR++  +  IAFVE
Sbjct: 161 PGGMKPNMPEAPAPPNNILFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVE 219



 Score = 33.1 bits (72), Expect = 0.17
 Identities = 18/35 (51%), Positives = 22/35 (62%)
 Frame = +2

Query: 497 FC*IGNEMQSAAAKEALQGFKITPTHAMKITFAKK 601
           F    +EMQS  A + LQGFKI   + M IT+AKK
Sbjct: 217 FVEFADEMQSTVAMQGLQGFKI-QQNQMLITYAKK 250



 Score = 31.9 bits (69), Expect = 0.38
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 88  GQAFVIFREISSATVALRSMQGFPFYDKPMRIQYSK 195
           G AFV F +   +TVA++ +QGF      M I Y+K
Sbjct: 214 GIAFVEFADEMQSTVAMQGLQGFKIQQNQMLITYAK 249


>At3g21215.1 68416.m02681 RNA-binding protein, putative contains RNA
           recognition motif, Pfam:PF00076; contains AT-AC splice
           sites at intron 8
          Length = 339

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +3

Query: 363 EQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLV-PNRHDIAFVELE 512
           + PP   LF+ NL +  +E  L  L +  PGFK+++++   RH + F+E E
Sbjct: 228 DNPPCNTLFIGNLGENINEEELRSLLSAQPGFKQMKILRQERHTVCFIEFE 278


>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 823

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 23/65 (35%), Positives = 37/65 (56%)
 Frame = +1

Query: 7   LKKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQ 186
           L++ L   F +FG+ L+ +A +    R  AFV F     A  A+ S+QGFP    P+RI+
Sbjct: 35  LERELADRFLRFGE-LESLAFQP--GRSYAFVNFNHDEDAFAAIESLQGFPLSGNPLRIE 91

Query: 187 YSKID 201
           ++K +
Sbjct: 92  FAKAE 96



 Score = 34.7 bits (76), Expect = 0.054
 Identities = 25/85 (29%), Positives = 38/85 (44%)
 Frame = +1

Query: 28  IFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQYSKIDSD 207
           +FS FG+I  +        R  AFV FR + +A  A  S+QG  F +  + I ++K +  
Sbjct: 171 VFSSFGEITKVTVFPG---RSYAFVQFRNLMAACKAKESLQGKLFGNPRVHICFAKSEPS 227

Query: 208 IIAKSKGTFQERPKRPSYLKVLMMG 282
                +G    R   P Y  V  +G
Sbjct: 228 SSGSGRGP-SGRSLSPPYRSVDRLG 251


>At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing
           protein contains INTERPRO:IPR000504 RNA-binding region
           RNP-1 (RNA recognition motif) domain
          Length = 442

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 20/48 (41%), Positives = 28/48 (58%)
 Frame = +1

Query: 52  LDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQYSK 195
           L +  M+  +MRGQAF+ F  +  A  AL  + GF F  KPM IQ+ +
Sbjct: 386 LGVRLMQEGRMRGQAFLTFPSVEVAHRALNLVNGFVFKGKPMIIQFGR 433



 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/60 (30%), Positives = 31/60 (51%)
 Frame = +1

Query: 28  IFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQYSKIDSD 207
           +FSQ+G    +      K+R  AFV F+  + A+ A R + G  F  K +++Q +   +D
Sbjct: 47  LFSQYGASA-VRPCSGGKLRNAAFVDFKNEAFASQAHRQLNGLRFLGKVLQVQRANKPND 105


>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
           terminal ear1 gb|AAC39463.1
          Length = 527

 Score = 35.5 bits (78), Expect = 0.031
 Identities = 22/60 (36%), Positives = 32/60 (53%)
 Frame = +1

Query: 16  SLYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQYSK 195
           +L  IF  +G++  +   +T   R Q FV F ++  A  ALR M G     KPM IQ+S+
Sbjct: 198 TLRHIFQVYGEVKQV--RETPCKREQRFVEFFDVRDAAKALRVMNGKVISGKPMVIQFSR 255


>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
           PABP, putative similar to polyadenylate-binding protein
           (poly(A)-binding protein) from {Arabidopsis thaliana}
           SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
           SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 537

 Score = 34.7 bits (76), Expect = 0.054
 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
 Frame = +1

Query: 19  LYAIFSQFGQILDIVAM--KTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQYS 192
           L  IF  +GQI+    M  +  + +G  FV F     +  A R + GF    KP+ ++ +
Sbjct: 320 LREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVA 379

Query: 193 KIDSDIIAKSKGTFQERPKR 252
           +   D I + +  FQ +P++
Sbjct: 380 ERKEDRIKRLQQYFQAQPRQ 399



 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +1

Query: 19  LYAIFSQFGQILDIVAMK--TLKMRGQAFVIFREISSATVALRSMQGFPFYDKPM 177
           L+ +FSQ+G +  +V M+    + RG  FV F    +A  A+ S+ G     K +
Sbjct: 218 LHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKL 272


>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein cp33, putative similar to
           33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
           sylvestris]
          Length = 293

 Score = 34.7 bits (76), Expect = 0.054
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = +1

Query: 19  LYAIFSQFGQILDIVAMK---TLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQY 189
           L  +F  FG ++ +   +   T + RG  +V    I+SA +A+ S+ G     + MR++Y
Sbjct: 124 LLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRY 183

Query: 190 S 192
           S
Sbjct: 184 S 184


>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
           identical to GB:Q05196 from [Arabidopsis thaliana]
          Length = 668

 Score = 34.3 bits (75), Expect = 0.072
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +1

Query: 13  KSLYAIFSQFGQILDI-VAMKTL-KMRGQAFVIFREISSATVALRSMQGFPFYDK 171
           K+LY  FS FG IL   VAM  + + +G  FV F +  +A  A+  + G    DK
Sbjct: 146 KALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDK 200


>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
           protein similar to RNA recognition motif-containing
           protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 271

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
 Frame = +1

Query: 31  FSQFGQILDIVAM---KTLKMRGQAFVIFREISSATVAL 138
           F QFG+IL+ V +    T K +G  FV FRE  SAT A+
Sbjct: 37  FEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAV 75


>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
           protein similar to RNA recognition motif-containing
           protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 287

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
 Frame = +1

Query: 31  FSQFGQILDIVAM---KTLKMRGQAFVIFREISSATVAL 138
           F QFG+IL+ V +    T K +G  FV FRE  SAT A+
Sbjct: 37  FEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAV 75


>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
           (RSP31) identical to SP|P92964 Arginine/serine-rich
           splicing factor RSP31 {Arabidopsis thaliana}
          Length = 264

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
 Frame = +1

Query: 1   EELKKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPF-YDK-P 174
           E  +  L  +F ++G++ D V MK+    G AFV F +   A  A+R +  FPF Y+K  
Sbjct: 12  ETRQSDLERLFDKYGRV-DRVDMKS----GYAFVYFEDERDAEDAIRKLDNFPFGYEKRR 66

Query: 175 MRIQYSK 195
           + ++++K
Sbjct: 67  LSVEWAK 73


>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 352

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 16/60 (26%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
 Frame = +1

Query: 19  LYAIFSQFGQILDIVAMK---TLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQY 189
           L A+FSQ+G+I+D+  ++   T K +G AF+ + +  S  +A+ ++ G     + +++ +
Sbjct: 52  LLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGALVLGRTIKVDH 111


>At5g42820.2 68418.m05216 U2 snRNP auxiliary factor small subunit,
           putative strong similarity to U2 snRNP auxiliary factor,
           small subunit [Oryza sativa] GI:3850816
          Length = 283

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 16/68 (23%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = +1

Query: 1   EELKKSLYAIFSQFGQILDIVAMKTLK--MRGQAFVIFREISSATVALRSMQGFPFYDKP 174
           E+  + ++   ++FG++  +     L   M G  +V+F+E   A  AL+++QG  +  +P
Sbjct: 79  EDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEEDHAAAALQALQGRFYSGRP 138

Query: 175 MRIQYSKI 198
           +   +S +
Sbjct: 139 IIADFSPV 146


>At5g42820.1 68418.m05215 U2 snRNP auxiliary factor small subunit,
           putative strong similarity to U2 snRNP auxiliary factor,
           small subunit [Oryza sativa] GI:3850816
          Length = 283

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 16/68 (23%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = +1

Query: 1   EELKKSLYAIFSQFGQILDIVAMKTLK--MRGQAFVIFREISSATVALRSMQGFPFYDKP 174
           E+  + ++   ++FG++  +     L   M G  +V+F+E   A  AL+++QG  +  +P
Sbjct: 79  EDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEEDHAAAALQALQGRFYSGRP 138

Query: 175 MRIQYSKI 198
           +   +S +
Sbjct: 139 IIADFSPV 146


>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
          Length = 310

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = +1

Query: 1   EELKKSLYAIFSQFGQILDIVAM---KTLKMRGQAFVIFREISSATVALRSMQGFPFYDK 171
           E   + L   FS+FG ILD   M    T + RG  F+ F +  +   ++R M G  F D+
Sbjct: 17  EVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREMHGRDFGDR 76

Query: 172 PMRI 183
            + +
Sbjct: 77  VISV 80


>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
           protein similar to UBP1 interacting protein 1a
           [Arabidopsis thaliana] GI:19574236; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 146

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
 Frame = +1

Query: 31  FSQFGQILDIVAMK---TLKMRGQAFVIFREISSATVAL 138
           F QFG+IL+ V +    T K +G  FV FR+  SAT A+
Sbjct: 37  FDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAV 75


>At1g27650.1 68414.m03379 U2 snRNP auxiliary factor small subunit,
           putative Strong similarity to gb|Y18349 U2 snRNP
           auxiliary factor, small subunit from Oryza sativa. ESTs
           gb|AA586295 and gb|AA597332 come from this gene
          Length = 296

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = +1

Query: 1   EELKKSLYAIFSQFGQI--LDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKP 174
           E+  + L+    +FG+I  L+I       M G  +V F+E   A  AL+++QG  +  +P
Sbjct: 79  EDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEEDQAAAALQALQGRFYSGRP 138

Query: 175 MRIQYSKI 198
           +   +S +
Sbjct: 139 IIADFSPV 146


>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
           protein similar to SP|P52298 20 kDa nuclear cap binding
           protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
           protein 1) (NIP1) {Homo sapiens}; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 124

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +1

Query: 13  KSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQY 189
           + +Y IF ++G I  I        +G AFV++ +I  A  A+  + GF   ++ + + Y
Sbjct: 33  EEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYDAKNAVDHLSGFNVANRYLIVLY 91


>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 783

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
 Frame = +1

Query: 1   EELKKSLYAIFSQFGQILDI-VAMKTL-KMRGQAFVIFREISSATVALRSMQGFPFYDKP 174
           E  K+ L  +FS FGQI  + +  K + +  G AFV F     A  A +++    FY + 
Sbjct: 679 EATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNAKKALASTHFYGRH 738

Query: 175 MRIQYSKIDSDIIAKSK 225
           + ++++  D+ + A  K
Sbjct: 739 LVLEWANDDNSMEAIRK 755


>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
           protein low similarity to splicing factor SC35
           [Arabidopsis thaliana] GI:9843653; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 261

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +1

Query: 19  LYAIFSQFGQILDIVAMK---TLKMRGQAFVIFREISSATVALRSM 147
           ++ +FS FG++  +  +K   T + RG AFV++     A  A RSM
Sbjct: 73  IHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSM 118


>At1g36160.1 68414.m04495 acetyl-CoA carboxylase 1 (ACC1) nearly
            identical to acetyl-CoA carboxylase 1 (ACC1) [Arabidopsis
            thaliana] GI:11869927
          Length = 2247

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 500  KSDIMSVWHETNLLKAWELIEQH 432
            K  +   WH + LL +WE +E+H
Sbjct: 1086 KDSVRMQWHRSGLLASWEFLEEH 1108


>At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C)
           similar to RIBOSOMAL PROTEIN L9 GB:P49209 from
           [Arabidopsis thaliana]
          Length = 194

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -3

Query: 493 ISCLFGTRRTSLKPGN*LNNIDNIISEVSSGRFVKNR 383
           I   FGTR+TS      L+++DN+IS V+ G   K R
Sbjct: 60  IDSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMR 96


>At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) similar
           to RIBOSOMAL PROTEIN L9 GB:P49209 from [Arabidopsis
           thaliana]
          Length = 194

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -3

Query: 493 ISCLFGTRRTSLKPGN*LNNIDNIISEVSSGRFVKNR 383
           I   FGTR+TS      L+++DN+IS V+ G   K R
Sbjct: 60  IDSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMR 96


>At5g53180.1 68418.m06611 polypyrimidine tract-binding protein,
           putative / heterogeneous nuclear ribonucleoprotein,
           putative similar to Polypyrimidine tract-binding protein
           1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
           (hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
           sapiens} SP|P26599; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 429

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +3

Query: 366 QPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRL-VPNRHDIAFVELEMKCNLQQLKK 542
           QPP+++L L NLP E +E  L  L   F      +  V    + AF+E E      Q+  
Sbjct: 14  QPPSKVLHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANRNQAFIEFEDLNQAIQMIS 73

Query: 543 HYKDS 557
           +Y  S
Sbjct: 74  YYASS 78



 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = +1

Query: 19  LYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYD 168
           L+ +F+ FG++  I AM       QA + + ++ +A VA  +++G   YD
Sbjct: 262 LHMVFAAFGEVQKI-AMFDKNGGVQALIQYSDVQTAVVAKEALEGHCIYD 310


>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 1056

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 40  FGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQG 153
           FG+  DI  +     RG AF+ +R +  A  A  ++QG
Sbjct: 38  FGRYGDIDRITVYSSRGFAFIYYRHVEEAVAAKEALQG 75


>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
           Glycine-rich RNA-binding protein from {Sinapis alba}
           SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
           thaliana} SP|Q03251; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 117

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +1

Query: 10  KKSLYAIFSQFGQILD---IVAMKTLKMRGQAFVIFREISSATVALRSM 147
           +K L  IFS+FG ++D   I    T K R   FV F E  S T A+  M
Sbjct: 20  EKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIMIM 68


>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
           similar to SP|P52298 20 kDa nuclear cap binding protein
           (CBP20) (NCBP interacting protein 1) {Homo sapiens};
           non-consensus AT donor splice site at exon 4, AC
           acceptor splice site at exon 5; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 257

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +1

Query: 10  KKSLYAIFSQFGQILDIVA---MKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMR 180
           ++ LY +FS+ G+I  I+      T    G  FV+F        A++ + G    D+P+R
Sbjct: 47  EEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKYISGTILDDRPIR 106

Query: 181 IQY 189
           + +
Sbjct: 107 VDF 109


>At4g08130.1 68417.m01337 hypothetical protein 
          Length = 226

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +3

Query: 345 LNNVNAEQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVELE 512
           L +  A  PP Q   + +LP++  E    +L    P + E RL P+ H +A +E E
Sbjct: 78  LASYQAPPPPAQRSKIESLPEQILEGQKKILERYIPRWTERRLTPSWH-VALMESE 132


>At2g29220.1 68415.m03551 lectin protein kinase, putative similar to
           receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733; contains protein kinase domain,
           Pfam:PF00069; contains legume lectins alpha and beta
           domains, Pfam:PF00138 and Pfam:PF00139
          Length = 627

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +3

Query: 306 SRLIGHGIPGAGILNNVNAEQPPNQILFLTNLPDETSEMMLSMLFNQFP 452
           ++ + HG  GA +LN  +++  P+ +L LTN    TS   +   F+ FP
Sbjct: 27  TKFLNHGFLGANLLNFGSSKVYPSGLLELTN----TSMRQIGQAFHGFP 71


>At5g23590.1 68418.m02768 DNAJ heat shock N-terminal
           domain-containing protein low similarity to SP|P39101
           CAJ1 protein Saccharomyces cerevisiae; contains Pfam
           profile PF00226 DnaJ domain
          Length = 296

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +1

Query: 19  LYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQG 153
           L  +FS+FG++ D+V +++ K +  A ++      A  A R++ G
Sbjct: 191 LREVFSEFGEVEDVV-IRSTKKKCSALIVMATKDGAVAATRTLCG 234


>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 100

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +1

Query: 13  KSLYAIFSQFGQILDIVAM---KTLKMRGQAFVIFREISSATVA 135
           + L + F +FG+I+    +    T + +G  FV FRE+ SAT A
Sbjct: 23  EGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRA 66


>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
           protein Mei2-like protein, Arabidopsis thaliana,
           gb:D86122
          Length = 785

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 360 AEQPPNQ-ILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVE 506
           +E+  NQ  L + NL    S   L  +F  +   KE+R  PN+    FVE
Sbjct: 215 SEKDVNQGTLVVFNLAPSVSNRDLENIFGVYGEIKEIRETPNKRHHKFVE 264


>At1g58190.1 68414.m06605 leucine-rich repeat family protein contains
            leucine rich-repeat (LRR) domains Pfam:PF00560,
            INTERPRO:IPR001611; contains similarity to Cf-2.2
            [Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 1784

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 426  LSMLFNQFPGFKEVRLVPNRHDIAFVELEMKCNLQQLKK 542
            L++  N+F GF  + L+ N   +   +L  + NL +LKK
Sbjct: 1130 LALSDNEFKGFFSLELIANLSKLKVFKLSSRSNLLRLKK 1168


>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
           similar to gb|U90212 DNA binding protein ACBF from
           Nicotiana tabacum and contains 3 PF|00076 RNA
           recognition motif domains. ESTs gb|T44278, gb|R65195,
           gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
           gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
          Length = 405

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 58  IVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRI 183
           ++   T + +G  FV F + S    A+  M G P   +PMRI
Sbjct: 188 VIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRI 229


>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
           similar to gb|U90212 DNA binding protein ACBF from
           Nicotiana tabacum and contains 3 PF|00076 RNA
           recognition motif domains. ESTs gb|T44278, gb|R65195,
           gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
           gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
          Length = 306

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 58  IVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRI 183
           ++   T + +G  FV F + S    A+  M G P   +PMRI
Sbjct: 188 VIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRI 229


>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
           protein identical to SP|O22315 Pre-mRNA splicing factor
           SF2 (SR1 protein) {Arabidopsis thaliana}
          Length = 303

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +1

Query: 28  IFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQ 186
           +FS++G ++ I      +  G AFV F +   A  A+    G+ F    +R++
Sbjct: 26  LFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVE 78


>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
           protein identical to SP|O22315 Pre-mRNA splicing factor
           SF2 (SR1 protein) {Arabidopsis thaliana}
          Length = 285

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +1

Query: 28  IFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQ 186
           +FS++G ++ I      +  G AFV F +   A  A+    G+ F    +R++
Sbjct: 26  LFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVE 78


>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
           protein identical to SP|O22315 Pre-mRNA splicing factor
           SF2 (SR1 protein) {Arabidopsis thaliana}
          Length = 303

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +1

Query: 28  IFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQ 186
           +FS++G ++ I      +  G AFV F +   A  A+    G+ F    +R++
Sbjct: 26  LFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVE 78


>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
           Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
           protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
           like factor 3 [Homo sapiens] GI:12746392; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 439

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 333 GAGILNNVNAEQPPNQILFLTNLPDETSEMMLSMLFNQF 449
           G G+ + V  E P    LF+ N+P E  +  L+  F  F
Sbjct: 333 GIGLSSVVQTEGPEGANLFIYNIPREFGDQELAAAFQSF 371


>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
           Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
           protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
           like factor 3 [Homo sapiens] GI:12746392; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 441

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 333 GAGILNNVNAEQPPNQILFLTNLPDETSEMMLSMLFNQF 449
           G G+ + V  E P    LF+ N+P E  +  L+  F  F
Sbjct: 334 GIGLSSVVQTEGPEGANLFIYNIPREFGDQELAAAFQSF 372


>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
           protein, putative strong similarity to SP|O22315
           Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
           thaliana}; cDNA NCBI_gi:15810292 supports a truncated
           version while protein evidence supports a longer model.
          Length = 278

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +1

Query: 28  IFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQ 186
           +FS++G ++ I      +  G AFV F +   A  A+    G+ F    +R++
Sbjct: 26  LFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGYDFDGHHLRVE 78


>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
           protein, putative strong similarity to SP|O22315
           Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
           thaliana}; cDNA NCBI_gi:15810292 supports a truncated
           version while protein evidence supports a longer model.
          Length = 178

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +1

Query: 28  IFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQ 186
           +FS++G ++ I      +  G AFV F +   A  A+    G+ F    +R++
Sbjct: 26  LFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGYDFDGHHLRVE 78


>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein RNP-T, putative /
           RNA-binding protein 1/2/3, putative / RNA-binding
           protein cp31, putative similar to SP|Q04836 31 kDa
           ribonucleoprotein, chloroplast precursor (RNA-binding
           protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
           thaliana}; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 289

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 348 NNVNAEQPPNQI-LFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNR 485
           + V   +PP +  LF+ NLP +     L+MLF Q    +   ++ NR
Sbjct: 102 DGVGFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNR 148


>At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D)
           ribosomal protein L9, cytosolic - garden pea,
           PIR2:S19978
          Length = 194

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -3

Query: 493 ISCLFGTRRTSLKPGN*LNNIDNIISEVSSGRFVKNR 383
           I   FG+R+TS      L+++DN+I+ V+ G   + R
Sbjct: 60  IDSWFGSRKTSASIRTALSHVDNLIAGVTQGFLYRMR 96


>At3g10420.2 68416.m01250 sporulation protein-related similar to
           hypothetical proteins: GB:P51281 [Chloroplast Porphyra
           purpurea], GB:BAA16982 [Synechocystis sp], GB:P49540
           [Odontella sinensis], GB:AAB82669 [Chloroplast Cyanidium
           caldarium]; similar to stage III sporulation protein AA
           (GI:18145497) [Clostridium perfringens str. 13]; similar
           to stage III sporulation protein AA (mutants block
           sporulation after engulfment) (GI:22777578)
           [Oceanobacillus iheyensis]
          Length = 684

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 405 DETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVELEM 515
           D   E+ L++ +   PG + V L+P R DI   +LE+
Sbjct: 592 DALEEVRLAIEYIVIPGGEPVELLPRRSDIIVRQLEL 628


>At1g50230.1 68414.m05632 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 269

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 97  FVIFREISSATVALRSMQGFPFYDKPMRIQYSKIDSDIIAKSKG 228
           F   R +S+ TV LRS++G P Y  P  ++    D  +   S G
Sbjct: 146 FGFARAMSTNTVVLRSIKGTPLYMAPELVKEQPYDRTVDLWSLG 189


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,448,589
Number of Sequences: 28952
Number of extensions: 271491
Number of successful extensions: 724
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -