Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00005
         (439 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g26110.1 68414.m03186 expressed protein                             29   1.0  
At2g36350.1 68415.m04461 protein kinase, putative similar to pro...    27   4.2  
At4g12370.1 68417.m01955 hypothetical protein                          27   5.5  
At4g12830.1 68417.m02011 hydrolase, alpha/beta fold family prote...    27   7.3  

>At1g26110.1 68414.m03186 expressed protein
          Length = 611

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 142 PAPLAVSDGNSLRSRSGGVDVSPPSPKTE 56
           P PL V+ G  L+S S  V +SPPS   +
Sbjct: 361 PKPLLVTPGQLLQSGSSAVSLSPPSTNAD 389


>At2g36350.1 68415.m04461 protein kinase, putative similar to
           protein kinase KIPK (KCBP-interacting protein kinase)
           [Arabidopsis thaliana] gi|7716430|gb|AAF68383
          Length = 949

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +3

Query: 3   SMSSMSNLSRFNAGNNYH 56
           SMS  SNLSRF+ GN  H
Sbjct: 517 SMSEESNLSRFSCGNKPH 534


>At4g12370.1 68417.m01955 hypothetical protein
          Length = 300

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 221 FRCRLLHHTNIGFRARRWWCCSG 153
           FR   L+H+N+ +  RR++C  G
Sbjct: 121 FRSETLNHSNVVYAKRRFYCLDG 143


>At4g12830.1 68417.m02011 hydrolase, alpha/beta fold family protein
           low similarity to haloalkane dehalogenase from
           [Mycobacterium avium subsp. avium] GI:14422311,
           [Pseudomonas pavonaceae] GI:6689030; contains Pfam
           profile PF00561: hydrolase, alpha/beta fold family
          Length = 393

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -1

Query: 139 APLAVSDGNSLRSRSGGVDVSPPSPKTEW 53
           AP++V DG S    SGG     PSP  EW
Sbjct: 57  APVSVGDGFSF---SGGKYSDQPSPSDEW 82


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,725,354
Number of Sequences: 28952
Number of extensions: 122096
Number of successful extensions: 343
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)