Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0195.Seq
         (797 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g13540.1 68415.m01493 mRNA cap-binding protein (ABH1) identic...    65   4e-11
At4g36980.1 68417.m05240 expressed protein                             31   1.2  
At4g34400.1 68417.m04886 transcriptional factor B3 family protei...    29   2.7  
At3g43390.1 68416.m04592 hypothetical protein similar to At3g243...    28   6.2  

>At2g13540.1 68415.m01493 mRNA cap-binding protein (ABH1) identical
           to mRNA cap binding protein [Arabidopsis thaliana]
           GI:15192738; contains Pfam profile PF02854: MIF4G
           domain; identical to cDNA nuclear cap-binding protein
           CBP80 GI:8515770
          Length = 848

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 10/147 (6%)
 Frame = +2

Query: 263 KILRILTDCAIRMPEKCTIYATLVGLLNAKNYNFGGEFVDYIVKTFKENLKVGKWNAARY 442
           ++L  L  CA ++P K  +Y TL+GLLN +N +F  + V+ +   F+  L  G  N+ R 
Sbjct: 45  QVLPFLLQCAEQLPHKIPLYGTLIGLLNLENEDFVQKLVESVHANFQVALDSGNCNSIRI 104

Query: 443 CLRFIADLVNCHVLAASSLLTL*RH**ILLMKMEYLTSEGIG----------LYLAVLSA 592
            LRF+  L+   V+  +SL+ +      LL        E  G            + +LS+
Sbjct: 105 LLRFMTSLLCSKVIQPASLIVVFE---TLLSSAATTVDEEKGNPSWQPQADFYVICILSS 161

Query: 593 LPWVGREXYXKKXSQLDHLLVTIEGFL 673
           LPW G E   +   +++ +LV I+ +L
Sbjct: 162 LPWGGSELAEQVPDEIERVLVGIQAYL 188


>At4g36980.1 68417.m05240 expressed protein
          Length = 560

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 39  DTHSDFIMNRRRGHDDEEGYERLHRK 116
           + + D I +RRRG  DEEG + +H++
Sbjct: 116 ERYRDLIKHRRRGFSDEEGLQHVHQE 141


>At4g34400.1 68417.m04886 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 389

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 308 KCTIYATLVGLLNAKNYNFG-GEFVDYIVKTFKENLKVGKWNAARYCLR 451
           K  +Y  LV     K+Y    G++V+YI +  K + K  KW   R C++
Sbjct: 300 KNRLYELLVHAQLVKDYCLRFGDYVNYIDRFGKLSAKTAKWKDQRVCIK 348


>At3g43390.1 68416.m04592 hypothetical protein similar to At3g24380,
            At5g36840, At5g35010, At3g42740, At4g05290, At2g14770,
            At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
            At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
            At4g05280, At1g25886, At4g03300
          Length = 1113

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 265  NTTDTNGLCYPHAREMYNLCNSCWFVEC 348
            +T +   +CY  +R   NLCN C+   C
Sbjct: 1078 STPECTEMCYMRSRLFNNLCNQCYIWLC 1105


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,271,742
Number of Sequences: 28952
Number of extensions: 319931
Number of successful extensions: 846
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)