Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0067.Seq
         (797 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g20900.1 68414.m02617 DNA-binding protein-related contains Pf...    29   2.7  
At5g10940.1 68418.m01269 transducin family protein / WD-40 repea...    28   8.3  

>At1g20900.1 68414.m02617 DNA-binding protein-related contains Pfam
           domain PF03479: Domain of unknown function (DUF296),
           found in AT-hook motifs Pfam:PF02178
          Length = 311

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
 Frame = +3

Query: 315 RRRQXLADTSYVPQQENEVYYPQ-----QPETRSSAPXKRPNWLTPLXRSNCTPPL 467
           +++Q  +D S      N+ ++ Q      P T SSAP KRP    P  ++   PP+
Sbjct: 48  QQQQQPSDDSRESDHSNKDHHQQGRPDSDPNTSSSAPGKRPRGRPPGSKNKAKPPI 103


>At5g10940.1 68418.m01269 transducin family protein / WD-40 repeat
           family protein unnamed ORF cDNA FLJ10872, Homo sapiens,
           EMBL:AK001734; contains Pfam PF00400: WD domain, G-beta
           repeat (6 copies,1 weak)
          Length = 757

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = -3

Query: 618 FSPVFLKSLFACSSNXRXPSSLGAPQTSSTPGSGKFKNRQAASVALAT 475
           ++P  + +LF+ S+N     S   PQ S+TP +G  ++  AA+V   T
Sbjct: 320 YTPGDVDNLFSFSNNLHDVES--PPQVSTTPQNGFHRSSNAATVKKCT 365


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,552,876
Number of Sequences: 28952
Number of extensions: 230258
Number of successful extensions: 520
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)