Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0079
(449 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 124 4e-29
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 122 8e-29
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 122 8e-29
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 122 1e-28
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 119 8e-28
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 118 2e-27
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 118 2e-27
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 114 2e-26
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 114 2e-26
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 72 2e-13
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 72 2e-13
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 72 2e-13
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 72 2e-13
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 72 2e-13
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 72 2e-13
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 71 5e-13
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 50 1e-06
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 49 1e-06
At4g37190.1 68417.m05265 expressed protein 30 0.63
At2g26850.1 68415.m03221 F-box family protein contains Pfam PF00... 29 1.1
At5g55500.1 68418.m06912 beta-(1,2)-xylosyltransferase (XYLT) id... 29 1.5
At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putati... 28 3.4
At1g53300.1 68414.m06041 thioredoxin family protein contains Pfa... 27 4.4
At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger) fa... 27 7.7
At2g39000.2 68415.m04795 GCN5-related N-acetyltransferase (GNAT)... 27 7.7
At2g39000.1 68415.m04794 GCN5-related N-acetyltransferase (GNAT)... 27 7.7
At2g32810.1 68415.m04016 beta-galactosidase, putative / lactase,... 27 7.7
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 124 bits (298), Expect = 4e-29
Identities = 53/61 (86%), Positives = 59/61 (96%)
Frame = +2
Query: 254 HVYYNEASGGKYVPRAVMVDLXPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNLAKGHYT 433
+VYYNEASGG+YVPRAV++DL PGTMDS+RSGPFGQIFRPDNFVFGQSGAGNN AKGHYT
Sbjct: 49 NVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYT 108
Query: 434 D 436
+
Sbjct: 109 E 109
Score = 89.0 bits (211), Expect = 1e-18
Identities = 40/48 (83%), Positives = 44/48 (91%), Gaps = 1/48 (2%)
Frame = +3
Query: 114 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGD-SDLQLERI 254
MREI+HIQ GQCGNQIG+KFWEVI DEHGID+TG YSGD +DLQLERI
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGDTADLQLERI 48
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 122 bits (295), Expect = 8e-29
Identities = 53/61 (86%), Positives = 59/61 (96%)
Frame = +2
Query: 254 HVYYNEASGGKYVPRAVMVDLXPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNLAKGHYT 433
+VY+NEASGGKYVPRAV++DL PGTMDS+RSGPFGQIFRPDNFVFGQSGAGNN AKGHYT
Sbjct: 48 NVYFNEASGGKYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYT 107
Query: 434 D 436
+
Sbjct: 108 E 108
Score = 85.4 bits (202), Expect = 2e-17
Identities = 38/47 (80%), Positives = 40/47 (85%)
Frame = +3
Query: 114 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLERI 254
MREI+HIQ GQCGNQIGAKFWEVI EHGID TG GD+DLQLERI
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDLQLERI 47
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 122 bits (295), Expect = 8e-29
Identities = 52/61 (85%), Positives = 59/61 (96%)
Frame = +2
Query: 254 HVYYNEASGGKYVPRAVMVDLXPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNLAKGHYT 433
+VYYNEASGG+YVPRAV++DL PGTMDS+RSGP+GQIFRPDNFVFGQSGAGNN AKGHYT
Sbjct: 49 NVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYT 108
Query: 434 D 436
+
Sbjct: 109 E 109
Score = 87.4 bits (207), Expect = 4e-18
Identities = 38/48 (79%), Positives = 43/48 (89%), Gaps = 1/48 (2%)
Frame = +3
Query: 114 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDS-DLQLERI 254
MREI+H+Q GQCGNQIG+KFWEVI DEHG+D TG Y+GDS DLQLERI
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSADLQLERI 48
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 122 bits (294), Expect = 1e-28
Identities = 53/60 (88%), Positives = 58/60 (96%)
Frame = +2
Query: 257 VYYNEASGGKYVPRAVMVDLXPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNLAKGHYTD 436
VY+NEASGGKYVPRAV++DL PGTMDS+RSGPFGQIFRPDNFVFGQSGAGNN AKGHYT+
Sbjct: 49 VYFNEASGGKYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTE 108
Score = 89.4 bits (212), Expect = 1e-18
Identities = 40/47 (85%), Positives = 41/47 (87%)
Frame = +3
Query: 114 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLERI 254
MREI+HIQ GQCGNQIGAKFWEVI DEHGID TG Y GDS LQLERI
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPLQLERI 47
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 119 bits (287), Expect = 8e-28
Identities = 52/61 (85%), Positives = 58/61 (95%)
Frame = +2
Query: 254 HVYYNEASGGKYVPRAVMVDLXPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNLAKGHYT 433
+VYYNEAS G+YVPRAV++DL PGTMDSVRSGP+GQIFRPDNFVFGQSGAGNN AKGHYT
Sbjct: 48 NVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYT 107
Query: 434 D 436
+
Sbjct: 108 E 108
Score = 85.8 bits (203), Expect = 1e-17
Identities = 36/47 (76%), Positives = 42/47 (89%)
Frame = +3
Query: 114 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLERI 254
MREI+HIQ GQCGNQIG+KFWEV++ EHGID TG Y GDS+LQLER+
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSELQLERV 47
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 118 bits (283), Expect = 2e-27
Identities = 51/61 (83%), Positives = 58/61 (95%)
Frame = +2
Query: 254 HVYYNEASGGKYVPRAVMVDLXPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNLAKGHYT 433
+VYYNEAS G++VPRAV++DL PGTMDSVRSGP+GQIFRPDNFVFGQSGAGNN AKGHYT
Sbjct: 48 NVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYT 107
Query: 434 D 436
+
Sbjct: 108 E 108
Score = 87.4 bits (207), Expect = 4e-18
Identities = 36/47 (76%), Positives = 42/47 (89%)
Frame = +3
Query: 114 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLERI 254
MREI+HIQ GQCGNQIGAKFWEV+ EHGID+TG Y G++DLQLER+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQLERV 47
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 118 bits (283), Expect = 2e-27
Identities = 50/61 (81%), Positives = 58/61 (95%)
Frame = +2
Query: 254 HVYYNEASGGKYVPRAVMVDLXPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNLAKGHYT 433
+VYYNEAS G+YVPRA+++DL PGTMDSVR+GP+GQIFRPDNFVFGQSGAGNN AKGHYT
Sbjct: 48 NVYYNEASCGRYVPRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYT 107
Query: 434 D 436
+
Sbjct: 108 E 108
Score = 88.6 bits (210), Expect = 2e-18
Identities = 37/47 (78%), Positives = 42/47 (89%)
Frame = +3
Query: 114 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLERI 254
MREI+HIQ GQCGNQIG+KFWEV+ DEHGID TG Y G+SDLQLER+
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERV 47
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 114 bits (275), Expect = 2e-26
Identities = 49/61 (80%), Positives = 57/61 (93%)
Frame = +2
Query: 254 HVYYNEASGGKYVPRAVMVDLXPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNLAKGHYT 433
+VYYNEAS G++VPRAV++DL PGTMDS+RSGP+GQ FRPDNFVFGQSGAGNN AKGHYT
Sbjct: 48 NVYYNEASCGRFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYT 107
Query: 434 D 436
+
Sbjct: 108 E 108
Score = 90.2 bits (214), Expect = 6e-19
Identities = 39/47 (82%), Positives = 42/47 (89%)
Frame = +3
Query: 114 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLERI 254
MREI+HIQ GQCGNQIGAKFWEV+ EHGID TG Y+GDSDLQLERI
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERI 47
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 114 bits (275), Expect = 2e-26
Identities = 49/61 (80%), Positives = 57/61 (93%)
Frame = +2
Query: 254 HVYYNEASGGKYVPRAVMVDLXPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNLAKGHYT 433
+VYYNEAS G++VPRAV++DL PGTMDS+RSGP+GQ FRPDNFVFGQSGAGNN AKGHYT
Sbjct: 48 NVYYNEASCGRFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYT 107
Query: 434 D 436
+
Sbjct: 108 E 108
Score = 90.2 bits (214), Expect = 6e-19
Identities = 39/47 (82%), Positives = 42/47 (89%)
Frame = +3
Query: 114 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLERI 254
MREI+HIQ GQCGNQIGAKFWEV+ EHGID TG Y+GDSDLQLERI
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERI 47
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 71.7 bits (168), Expect = 2e-13
Identities = 28/60 (46%), Positives = 41/60 (68%)
Frame = +2
Query: 254 HVYYNEASGGKYVPRAVMVDLXPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNLAKGHYT 433
+ +++E GK+VPRAV VDL P +D VR+G + Q+F P+ + G+ A NN A+GHYT
Sbjct: 50 NTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYT 109
Score = 40.3 bits (90), Expect = 6e-04
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = +3
Query: 114 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDS 233
MREI+ I GQ G Q+G WE+ EHGI G D+
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDT 40
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 71.7 bits (168), Expect = 2e-13
Identities = 28/60 (46%), Positives = 41/60 (68%)
Frame = +2
Query: 254 HVYYNEASGGKYVPRAVMVDLXPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNLAKGHYT 433
+ +++E GK+VPRAV VDL P +D VR+G + Q+F P+ + G+ A NN A+GHYT
Sbjct: 50 NTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYT 109
Score = 40.3 bits (90), Expect = 6e-04
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = +3
Query: 114 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDS 233
MREI+ I GQ G Q+G WE+ EHGI G D+
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDT 40
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 71.7 bits (168), Expect = 2e-13
Identities = 28/60 (46%), Positives = 41/60 (68%)
Frame = +2
Query: 254 HVYYNEASGGKYVPRAVMVDLXPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNLAKGHYT 433
+ +++E GK+VPRAV VDL P +D VR+G + Q+F P+ + G+ A NN A+GHYT
Sbjct: 50 NTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYT 109
Score = 39.9 bits (89), Expect = 8e-04
Identities = 18/39 (46%), Positives = 21/39 (53%)
Frame = +3
Query: 114 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGD 230
MRE + I GQ G Q+G WE+ EHGI G GD
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGD 39
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 71.7 bits (168), Expect = 2e-13
Identities = 28/60 (46%), Positives = 41/60 (68%)
Frame = +2
Query: 254 HVYYNEASGGKYVPRAVMVDLXPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNLAKGHYT 433
+ +++E GK+VPRAV VDL P +D VR+G + Q+F P+ + G+ A NN A+GHYT
Sbjct: 50 NTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYT 109
Score = 39.9 bits (89), Expect = 8e-04
Identities = 18/39 (46%), Positives = 21/39 (53%)
Frame = +3
Query: 114 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGD 230
MRE + I GQ G Q+G WE+ EHGI G GD
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGD 39
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 71.7 bits (168), Expect = 2e-13
Identities = 28/60 (46%), Positives = 41/60 (68%)
Frame = +2
Query: 254 HVYYNEASGGKYVPRAVMVDLXPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNLAKGHYT 433
+ +++E GK+VPRAV VDL P +D VR+G + Q+F P+ + G+ A NN A+GHYT
Sbjct: 50 NTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYT 109
Score = 37.5 bits (83), Expect = 0.004
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +3
Query: 114 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGD 230
MRE + I GQ G Q+G WE+ EHGI G D
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSD 39
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 71.7 bits (168), Expect = 2e-13
Identities = 28/60 (46%), Positives = 41/60 (68%)
Frame = +2
Query: 254 HVYYNEASGGKYVPRAVMVDLXPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNLAKGHYT 433
+ +++E GK+VPRAV VDL P +D VR+G + Q+F P+ + G+ A NN A+GHYT
Sbjct: 50 NTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYT 109
Score = 37.5 bits (83), Expect = 0.004
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +3
Query: 114 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGD 230
MRE + I GQ G Q+G WE+ EHGI G D
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSD 39
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 70.5 bits (165), Expect = 5e-13
Identities = 27/60 (45%), Positives = 42/60 (70%)
Frame = +2
Query: 254 HVYYNEASGGKYVPRAVMVDLXPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNLAKGHYT 433
+ +++E S G++VPRAV +DL P +D VR+G + Q+F P+ + G+ A NN A+GHYT
Sbjct: 50 NTFFSETSSGQHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYT 109
Score = 41.9 bits (94), Expect = 2e-04
Identities = 19/40 (47%), Positives = 22/40 (55%)
Frame = +3
Query: 114 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDS 233
MREI+ I GQ G Q+G WE+ EHGI G DS
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDS 40
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 49.6 bits (113), Expect = 1e-06
Identities = 19/65 (29%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Frame = +2
Query: 257 VYYNEASGGKYVPRAVMVDLXPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNLAKGHY 430
V++ +A Y+PRA+++DL P ++ +++G + ++ +N GAGNN A G++
Sbjct: 50 VFFYQADDQHYIPRALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASGYH 109
Query: 431 TDRGL 445
+G+
Sbjct: 110 QGKGV 114
Score = 48.0 bits (109), Expect = 3e-06
Identities = 19/33 (57%), Positives = 24/33 (72%)
Frame = +3
Query: 117 REIVHIQAGQCGNQIGAKFWEVISDEHGIDATG 215
REI+ +Q GQCGNQIG +FW+ + EHGI G
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDG 35
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 49.2 bits (112), Expect = 1e-06
Identities = 19/65 (29%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Frame = +2
Query: 257 VYYNEASGGKYVPRAVMVDLXPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNLAKGHY 430
V++ +A Y+PRA+++DL P ++ +++G + ++ +N GAGNN A G++
Sbjct: 50 VFFYQADDQHYIPRALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASGYH 109
Query: 431 TDRGL 445
+G+
Sbjct: 110 QGKGV 114
Score = 48.0 bits (109), Expect = 3e-06
Identities = 19/33 (57%), Positives = 24/33 (72%)
Frame = +3
Query: 117 REIVHIQAGQCGNQIGAKFWEVISDEHGIDATG 215
REI+ +Q GQCGNQIG +FW+ + EHGI G
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDG 35
>At4g37190.1 68417.m05265 expressed protein
Length = 562
Score = 30.3 bits (65), Expect = 0.63
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 114 MREIVHIQAGQCGNQIGAKFW 176
MREIV IQ G+ N +G+ FW
Sbjct: 1 MREIVTIQVGEFANFVGSHFW 21
>At2g26850.1 68415.m03221 F-box family protein contains Pfam
PF00646: F-box domain; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 371
Score = 29.5 bits (63), Expect = 1.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 176 PELCSDLIPALTRLDVDDFPHDCTKNLEPP 87
P+L S ++ ++ LD+ D P DC L PP
Sbjct: 50 PDLASPVLGKMSILDLPDLPLDCILELLPP 79
>At5g55500.1 68418.m06912 beta-(1,2)-xylosyltransferase (XYLT)
identical to SP|Q9LDH0
Length = 534
Score = 29.1 bits (62), Expect = 1.5
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Frame = -1
Query: 275 KLRYSRHDAFKLQVGVAAVSTRGVNAVLVRDYFPE------LCSDLIPALTRLDVDDFPH 114
+L + RH F G +AVS R VN ++ +Y E DL+ ++ +D +DF
Sbjct: 171 RLGFKRHRRFGGGEGGSAVSRRLVNDEMLNEYMQEGGIDRHTMRDLVASIRAVDTNDFV- 229
Query: 113 DCTKNLEPP 87
C + +E P
Sbjct: 230 -CEEWVEEP 237
>At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putative
similar to (1-4)-beta-mannan endohydrolase [Coffea
arabica] GI:10178872, (1-4)-beta-mannan endohydrolase
GB:AAB87859 [Lycopersicon esculentum]; contains Pfam
profile PF00150: Cellulase (glycosyl hydrolase family 5)
Length = 408
Score = 27.9 bits (59), Expect = 3.4
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 120 EIVHIQAGQCGNQIGAKFWEVISD 191
+I++ A + G+ GA FWEVIS+
Sbjct: 346 DIIYASAQKGGSAAGALFWEVISE 369
>At1g53300.1 68414.m06041 thioredoxin family protein contains Pfam
profiles PF00085: Thioredoxin, PF00515: TPR Domain;
similar to tetratricopeptide repeat protein 2
(GI:7248701) [Drosophila melanogaster]; similar to DnaJ
homolog subfamily C member 7 (Tetratricopeptide repeat
protein 2) (TPR repeat protein 2) (Swiss-Prot:Q99615)
[Homo sapiens]
Length = 699
Score = 27.5 bits (58), Expect = 4.4
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = -3
Query: 405 PAPDCPKTKLSGRKICPNGPERTESMVPG-SRSTITARGT 289
PAP P L ICP+G + M SRS + GT
Sbjct: 129 PAPTSPANVLPTGNICPSGKIQITGMTQSRSRSDVLGSGT 168
>At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger)
family protein similar to C-terminal zinc-finger
[Glycine max] GI:558543; contains Pfam profile: PF00097
zinc finger, C3HC4 type (RING finger)
Length = 486
Score = 26.6 bits (56), Expect = 7.7
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -1
Query: 410 YSPPQTVRRRSCPVGRFAQTARNGRSPWFQXQGPPSQL 297
Y PPQ + + +G TA N P+ + PPS L
Sbjct: 61 YGPPQYHHQHASNLGSGMSTAPNFYVPYVNYEAPPSFL 98
>At2g39000.2 68415.m04795 GCN5-related N-acetyltransferase (GNAT)
family protein contains Pfam profile PF00583:
acetyltransferase, GNAT family
Length = 228
Score = 26.6 bits (56), Expect = 7.7
Identities = 11/46 (23%), Positives = 23/46 (50%)
Frame = -1
Query: 269 RYSRHDAFKLQVGVAAVSTRGVNAVLVRDYFPELCSDLIPALTRLD 132
R RH +F + + +++ NA + D FP + +++ RL+
Sbjct: 39 RRRRHSSFSISQAPSQINSGACNASQIVDLFPAVSPEIVVREARLE 84
>At2g39000.1 68415.m04794 GCN5-related N-acetyltransferase (GNAT)
family protein contains Pfam profile PF00583:
acetyltransferase, GNAT family
Length = 291
Score = 26.6 bits (56), Expect = 7.7
Identities = 11/46 (23%), Positives = 23/46 (50%)
Frame = -1
Query: 269 RYSRHDAFKLQVGVAAVSTRGVNAVLVRDYFPELCSDLIPALTRLD 132
R RH +F + + +++ NA + D FP + +++ RL+
Sbjct: 39 RRRRHSSFSISQAPSQINSGACNASQIVDLFPAVSPEIVVREARLE 84
>At2g32810.1 68415.m04016 beta-galactosidase, putative / lactase,
putative similar to beta-galactosidase GI:7939617 from
[Lycopersicon esculentum]
Length = 887
Score = 26.6 bits (56), Expect = 7.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 135 QAGQCGNQIGAKFWEVISDEHGIDATGAYSG 227
QA G IG ++W +IS + G D T Y G
Sbjct: 678 QAWVNGQHIG-RYWNIISQKDGCDRTCDYRG 707
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,127,711
Number of Sequences: 28952
Number of extensions: 207597
Number of successful extensions: 574
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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