Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0077
         (449 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g24440.1 68416.m03067 fibronectin type III domain-containing ...    30   0.63 
At4g37550.1 68417.m05314 formamidase, putative / formamide amido...    29   1.1  
At4g30200.3 68417.m04295 expressed protein contains weak similar...    27   4.4  
At4g30200.2 68417.m04294 expressed protein contains weak similar...    27   4.4  
At4g30200.1 68417.m04293 expressed protein contains weak similar...    27   4.4  
At5g57380.1 68418.m07169 fibronectin type III domain-containing ...    27   5.9  

>At3g24440.1 68416.m03067 fibronectin type III domain-containing
           protein contains Pfam profile PF00041: Fibronectin type
           III domain
          Length = 602

 Score = 30.3 bits (65), Expect = 0.63
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +3

Query: 126 FCKMTSCCTCEGHHSGAXSSLPLVC 200
           FCK  SCC C         SL LVC
Sbjct: 64  FCKRCSCCVCHNFDENKDPSLWLVC 88


>At4g37550.1 68417.m05314 formamidase, putative / formamide
           amidohydrolase, putative similar to SP|Q50228
           Formamidase (EC 3.5.1.49) (Formamide amidohydrolase)
           {Methylophilus methylotrophus}; contains Pfam profile
           PF03069: Acetamidase/Formamidase family
          Length = 452

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = +3

Query: 135 MTSCCTCEGHHSGAXSSLPLVC--LVPRDGASSEARXKPRPAQLGPQL 272
           + SCC CEG  SG   S   V    +P      + R K R   +GP++
Sbjct: 380 LLSCCPCEGRLSGIVDSPNAVATLAIPTAIFDQDIRPKNRKVPVGPRV 427


>At4g30200.3 68417.m04295 expressed protein contains weak
           similarities to Pfam profiles: PF00041 Fibronectin type
           III domain, PF00628 PHD-finger; supporting cDNA
           gi|11177136|dbj|AB050977.1|
          Length = 702

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 126 FCKMTSCCTCEGHHSGAXSSLPLVC 200
           FC+  SCC C  +      SL L C
Sbjct: 161 FCRRCSCCICRKYDDNKDPSLWLTC 185


>At4g30200.2 68417.m04294 expressed protein contains weak
           similarities to Pfam profiles: PF00041 Fibronectin type
           III domain, PF00628 PHD-finger; supporting cDNA
           gi|11177136|dbj|AB050977.1|
          Length = 714

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 126 FCKMTSCCTCEGHHSGAXSSLPLVC 200
           FC+  SCC C  +      SL L C
Sbjct: 161 FCRRCSCCICRKYDDNKDPSLWLTC 185


>At4g30200.1 68417.m04293 expressed protein contains weak
           similarities to Pfam profiles: PF00041 Fibronectin type
           III domain, PF00628 PHD-finger; supporting cDNA
           gi|11177136|dbj|AB050977.1|
          Length = 685

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 126 FCKMTSCCTCEGHHSGAXSSLPLVC 200
           FC+  SCC C  +      SL L C
Sbjct: 144 FCRRCSCCICRKYDDNKDPSLWLTC 168


>At5g57380.1 68418.m07169 fibronectin type III domain-containing
           protein / PHD finger protein-related contains Pfam
           profiles PF00041: Fibronectin type III domain, PF00628:
           PHD-finger
          Length = 600

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 126 FCKMTSCCTCEGHHSGAXSSLPLVC 200
           FC+  SCC C+        SL L C
Sbjct: 125 FCRRCSCCICQKFDDNKDPSLWLTC 149


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,572,562
Number of Sequences: 28952
Number of extensions: 154325
Number of successful extensions: 350
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)