Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0056
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15930.1 68417.m02419 dynein light chain, putative similar to...    85   3e-17
At4g27360.1 68417.m03927 dynein light chain, putative similar to...    61   5e-10
At1g52250.1 68414.m05895 dynein light chain type 1 family protei...    58   2e-09
At3g16120.1 68416.m02036 dynein light chain, putative similar to...    56   2e-08
At5g20110.1 68418.m02394 dynein light chain, putative similar to...    52   3e-07
At1g23220.1 68414.m02904 dynein light chain type 1 family protei...    44   4e-05
At1g05450.2 68414.m00553 protease inhibitor/seed storage/lipid t...    28   3.0  
At1g62870.1 68414.m07099 expressed protein                             27   7.0  

>At4g15930.1 68417.m02419 dynein light chain, putative similar to
           dynein light chain 2 [Mus musculus] GI:15545995;
           contains Pfam profile PF01221: Dynein light chain type 1
          Length = 103

 Score = 84.6 bits (200), Expect = 3e-17
 Identities = 35/57 (61%), Positives = 48/57 (84%)
 Frame = +2

Query: 83  RKAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGR 253
           ++AVIK+ADM ++MQ++A++ A  A EK+++EKDIA  IKKEFDKK+  TWHCIVGR
Sbjct: 18  KRAVIKSADMKDDMQKEAIEIAISAFEKYSVEKDIAENIKKEFDKKHGATWHCIVGR 74



 Score = 57.2 bits (132), Expect = 6e-09
 Identities = 24/31 (77%), Positives = 26/31 (83%)
 Frame = +1

Query: 247 GSYFGSYVTHETRHFIYFYLGQVAILLFKSG 339
           G  FGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct: 73  GRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 103


>At4g27360.1 68417.m03927 dynein light chain, putative similar to
           SP|O02414 Dynein light chain LC6, flagellar outer arm
           {Anthocidaris crassispina}; contains Pfam profile
           PF01221: Dynein light chain type 1
          Length = 103

 Score = 60.9 bits (141), Expect = 5e-10
 Identities = 28/61 (45%), Positives = 42/61 (68%), Gaps = 2/61 (3%)
 Frame = +2

Query: 74  MCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIEK--DIAAFIKKEFDKKYNPTWHCIV 247
           M + KAV+ + DM + M++DA+  A++AL+ F++ +   IA FIKKEFD+ Y   W CIV
Sbjct: 1   MLEGKAVMGDTDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSYGSGWQCIV 60

Query: 248 G 250
           G
Sbjct: 61  G 61



 Score = 37.9 bits (84), Expect = 0.004
 Identities = 16/29 (55%), Positives = 23/29 (79%)
 Frame = +1

Query: 247 GSYFGSYVTHETRHFIYFYLGQVAILLFK 333
           G++FGS+VTH +  FI+F +G + ILLFK
Sbjct: 61  GTHFGSFVTHCSGCFIHFSVGSLTILLFK 89


>At1g52250.1 68414.m05895 dynein light chain type 1 family protein
           similar to SP|O02414 Dynein light chain LC6, flagellar
           outer arm {Anthocidaris crassispina}; contains Pfam
           profile PF01221: Dynein light chain type 1
          Length = 94

 Score = 58.4 bits (135), Expect = 2e-09
 Identities = 27/61 (44%), Positives = 42/61 (68%), Gaps = 2/61 (3%)
 Frame = +2

Query: 74  MCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIE--KDIAAFIKKEFDKKYNPTWHCIV 247
           M + KA+++++DM  +MQ  A+  A+QAL+ F++   K IA  IKKEFD++Y   W C+V
Sbjct: 1   MLEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCVV 60

Query: 248 G 250
           G
Sbjct: 61  G 61



 Score = 32.3 bits (70), Expect = 0.19
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +1

Query: 247 GSYFGSYVTHETRHFIYFYLGQVAILLFKSG*T 345
           GS FG + TH    FIYF L  +  L+FK   T
Sbjct: 61  GSNFGCFFTHSKGTFIYFQLETLKFLIFKGAST 93


>At3g16120.1 68416.m02036 dynein light chain, putative similar to
           SP|O02414 Dynein light chain LC6, flagellar outer arm
           {Anthocidaris crassispina}; contains Pfam profile
           PF01221: Dynein light chain type 1
          Length = 93

 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
 Frame = +2

Query: 74  MCDRKAVIKNADMSEEMQQDAVDCATQALEKFNI--EKDIAAFIKKEFDKKYNPTWHCIV 247
           M + KA ++  DM  +MQ  A+  A+Q+L+ F++     IAA IKKEFD++Y   W C+V
Sbjct: 1   MLEGKAKVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVV 60

Query: 248 G 250
           G
Sbjct: 61  G 61



 Score = 34.7 bits (76), Expect = 0.035
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +1

Query: 247 GSYFGSYVTHETRHFIYFYLGQVAILLFK 333
           G+ FG + TH    FIYF+LG +  L+FK
Sbjct: 61  GTNFGCFFTHSKGTFIYFHLGTLNFLIFK 89


>At5g20110.1 68418.m02394 dynein light chain, putative similar to
           SP|O02414 Dynein light chain LC6, flagellar outer arm
           {Anthocidaris crassispina}; contains Pfam profile
           PF01221: Dynein light chain type 1
          Length = 209

 Score = 51.6 bits (118), Expect = 3e-07
 Identities = 28/52 (53%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
 Frame = +2

Query: 104 ADMSEEMQQDAVDCATQ---ALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVG 250
           ADM   MQ  A  CA     +LEKF+  K +A  +KKEFDK Y P WHCIVG
Sbjct: 122 ADMPGFMQAHAFRCARMTLDSLEKFS-SKHMAFNLKKEFDKGYGPAWHCIVG 172



 Score = 39.9 bits (89), Expect = 0.001
 Identities = 17/30 (56%), Positives = 23/30 (76%)
 Frame = +1

Query: 247 GSYFGSYVTHETRHFIYFYLGQVAILLFKS 336
           GS FGS+VTH T  FIYF + ++ +LLFK+
Sbjct: 172 GSSFGSFVTHSTGCFIYFSMDKLYVLLFKT 201


>At1g23220.1 68414.m02904 dynein light chain type 1 family protein
           similar to SP|O02414 Dynein light chain LC6, flagellar
           outer arm {Anthocidaris crassispina}; contains Pfam
           profile PF01221: Dynein light chain type 1
          Length = 129

 Score = 44.4 bits (100), Expect = 4e-05
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
 Frame = +2

Query: 38  VHLSKQKQTQDKMCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIEKD---IAAFIKKE 208
           +   K K+ QD+  +    ++ +DM    Q  A   + + L     + D   +A  +KK+
Sbjct: 19  IQKKKAKEQQDQKDEFNVRVRASDMPLPQQNRAFSLSREILNATPGKADNKRLAHALKKD 78

Query: 209 FDKKYNPTWHCIVG 250
           FD  Y P WHCIVG
Sbjct: 79  FDSAYGPAWHCIVG 92



 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 17/30 (56%), Positives = 23/30 (76%)
 Frame = +1

Query: 247 GSYFGSYVTHETRHFIYFYLGQVAILLFKS 336
           G+ FGSYVTH T  F+YF + +V +LLFK+
Sbjct: 92  GTSFGSYVTHSTGGFLYFQIDKVYVLLFKT 121


>At1g05450.2 68414.m00553 protease inhibitor/seed storage/lipid
           transfer protein (LTP)-related similar to geranyl
           diphosphate synthase large subunit [Mentha x piperita]
           GI:6449052
          Length = 205

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = -2

Query: 213 SNSFLMNAAMSFSML--NFSSA*VAQSTASCCISSLMS 106
           SNSFL++AA+ FS+L  N  ++ +AQ    C  S L S
Sbjct: 3   SNSFLISAALIFSLLSSNSPTSILAQINTPCSPSMLSS 40


>At1g62870.1 68414.m07099 expressed protein
          Length = 796

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = +2

Query: 164 KFNI--EKDIAAFIKKEFDKKYNPTW 235
           KFN+  E+ +   +++ F K Y+P W
Sbjct: 545 KFNVVEERQVEKIVERRFKKSYHPAW 570


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,542,858
Number of Sequences: 28952
Number of extensions: 199957
Number of successful extensions: 543
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)