Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0052
         (352 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72840.1 68414.m08425 disease resistance protein (TIR-NBS-LRR...    28   1.5  
At2g19560.1 68415.m02285 proteasome protein-related weak similar...    27   2.7  
At2g43030.1 68415.m05340 ribosomal protein L3 family protein con...    27   3.5  
At3g13530.1 68416.m01701 MAP3K epsilon protein kinase identical ...    27   4.6  
At1g17260.1 68414.m02102 ATPase 10, plasma membrane-type, putati...    26   8.1  

>At1g72840.1 68414.m08425 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1183

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +1

Query: 1    ISFIYRPFIKFLYTKNSIFYNIYWSKYNIFSTTFFRFSWNTSTIFRLSRL 150
            IS + R F+   Y++ + F  +  +KY+I ST   R SW      +L ++
Sbjct: 1021 ISDLVRDFMNEEYSQEAPFRLVCITKYSIASTNNMRTSWREPMRIKLPKI 1070


>At2g19560.1 68415.m02285 proteasome protein-related weak similarity
           to 26S proteasome non-ATPase regulatory subunit 3 (26S
           proteasome regulatory subunit S3) (p58) (Transplantation
           antigen P91A) (Tum-P91A antigen) (Swiss-Prot:P14685)
           [Mus musculus]
          Length = 413

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
 Frame = -3

Query: 191 YMNLMKKLYFMKYMSLDNLNIVEVFQLNLKNVVEKMLYL-LQ*IL*KIE----FLVYKNL 27
           Y  LMKK+Y  + +S    +     QL L+ + + + +L +   L ++E     L+YKNL
Sbjct: 328 YQRLMKKIYINQKLS----DPARAHQLKLEGIAKALRWLDMDMDLDEVECIMTILIYKNL 383

Query: 26  MKG 18
           +KG
Sbjct: 384 VKG 386


>At2g43030.1 68415.m05340 ribosomal protein L3 family protein
           contains Pfam profile PF00297: ribosomal protein L3
          Length = 271

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -2

Query: 201 NREIYEPNEEIIFHEIYESG 142
           N E +EPN++++F EI++ G
Sbjct: 141 NIEGFEPNQKLVFDEIFKEG 160


>At3g13530.1 68416.m01701 MAP3K epsilon protein kinase identical to
           MAP3K epsilon protein kinase [Arabidopsis thaliana]
           gi|3549652|emb|CAA12272
          Length = 1368

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/48 (29%), Positives = 31/48 (64%)
 Frame = -3

Query: 158 KYMSLDNLNIVEVFQLNLKNVVEKMLYLLQ*IL*KIEFLVYKNLMKGL 15
           K + L+N + V + Q++L+N+V++ L  +   +  ++ L +KN++K L
Sbjct: 36  KGLDLENGDFVAIKQVSLENIVQEDLNTIMQEIDLLKNLNHKNIVKYL 83


>At1g17260.1 68414.m02102 ATPase 10, plasma membrane-type, putative
           / proton pump 10, putative / proton-exporting ATPase,
           putative strong similarity to SP|Q43128 ATPase 10,
           plasma membrane-type (EC 3.6.3.6) (Proton pump 10)
           {Arabidopsis thaliana}; contains InterPro accession
           IPR001757: ATPase, E1-E2 type; contains Pfam profile
           PF00690: Cation transporter/ATPase, N-terminus
          Length = 947

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 14  TGLSLNSYILKIQFFTIFIGVNITFFPQHF 103
           TG+ + +Y+  +     +I V+ TFF +HF
Sbjct: 719 TGIVIGTYLALVTVLFYWIIVSTTFFEKHF 748


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,916,231
Number of Sequences: 28952
Number of extensions: 89231
Number of successful extensions: 207
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 439384704
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)