Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0047
(678 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g32605.1 68418.m03879 hypothetical protein 31 0.53
At4g00510.1 68417.m00070 cyclic nucleotide-binding domain-contai... 31 0.93
At3g43960.1 68416.m04706 cysteine proteinase, putative contains ... 30 1.6
At1g01710.1 68414.m00089 acyl-CoA thioesterase family protein co... 29 2.1
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 28 6.5
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 28 6.5
At5g38690.1 68418.m04678 expressed protein 27 8.6
At3g57230.1 68416.m06371 MADS-box protein (AGL16) MADS-box trans... 27 8.6
>At5g32605.1 68418.m03879 hypothetical protein
Length = 365
Score = 31.5 bits (68), Expect = 0.53
Identities = 24/78 (30%), Positives = 38/78 (48%)
Frame = +1
Query: 313 DSENYEGLENVKRRVQQAMRGKPKKKQLLSINDKALLNKPANERTEQEKNTYIELLAA*N 492
D+ Y LE V RR +GK ++ Q+ +I+D++ + T Y+ELL
Sbjct: 250 DANEYVALEEVIRR-----QGKVEENQVKNIDDQSKIWASLRRVTMDSSRKYVELLD--R 302
Query: 493 VLSVIQSRKEEISGSDVL 546
+L + + KEE S VL
Sbjct: 303 ILDLDKKSKEEDSSPYVL 320
>At4g00510.1 68417.m00070 cyclic nucleotide-binding
domain-containing protein contains Pfam profile: PF00027
cyclic nucleotide-binding domain
Length = 175
Score = 30.7 bits (66), Expect = 0.93
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +2
Query: 521 KKLAAVTYFKYYGPCRTIVRQHQDAHALYFIVSGEV 628
K+++ V FK Y +VR++Q+ +YF++ G+V
Sbjct: 25 KRISEVVVFKGYDRGDYVVRENQNVDGVYFLLQGQV 60
>At3g43960.1 68416.m04706 cysteine proteinase, putative contains
similarity to cysteine proteinase RD21A (thiol protease)
GI:435619, SP:P43297 from [Arabidopsis thaliana]
Length = 376
Score = 29.9 bits (64), Expect = 1.6
Identities = 26/92 (28%), Positives = 40/92 (43%)
Frame = +1
Query: 274 GRLVMANAHWLIEDSENYEGLENVKRRVQQAMRGKPKKKQLLSINDKALLNKPANERTEQ 453
G ++ WL+E+ +NY GL +RR K K L I + N N E+
Sbjct: 35 GEVLTMYEQWLVENGKNYNGLGEKERRF------KIFKDNLKRIEEH---NSDPNRSYER 85
Query: 454 EKNTYIELLAA*NVLSVIQSRKEEISGSDVLQ 549
N + +L A S + + E+ S SDV +
Sbjct: 86 GLNKFSDLTADEFQASYLGGKMEKKSLSDVAE 117
>At1g01710.1 68414.m00089 acyl-CoA thioesterase family protein
contains Pfam profiles: PF02551 acyl-CoA thioesterase,
PF00027 cyclic nucleotide-binding domain
Length = 427
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 521 KKLAAVTYFKYYGPCRTIVRQHQDAHALYFIVSGE 625
KK+A V K YG +VR+ Q YFI+ GE
Sbjct: 25 KKIAQVVVPKRYGKGDYVVREDQTWDGCYFILQGE 59
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 188 GRGGGAKKELDPEQLMKKKFRANVFF 265
GRGG +K+ELD L K+ F V F
Sbjct: 100 GRGGSSKRELDSVSLPKQNFGNLVHF 125
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 188 GRGGGAKKELDPEQLMKKKFRANVFF 265
GRGG +K+ELD L K+ F V F
Sbjct: 100 GRGGSSKRELDSVSLPKQNFGNLVHF 125
>At5g38690.1 68418.m04678 expressed protein
Length = 572
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +1
Query: 271 LGRLVMANAHWLIEDSENYEGLENVKRRVQQAMRGKPKKKQL 396
LG LVM N DS+N E +E K ++ K K+KQL
Sbjct: 397 LGTLVMRNCI----DSQNIESVERKKEAKEKINAAKDKEKQL 434
>At3g57230.1 68416.m06371 MADS-box protein (AGL16) MADS-box
transcription factor DEFH125 - Antirrhinum majus,
PIR:T17029; contains Pfam domain PF00319: SRF-type
transcription factor (DNA-binding and dimerisation
domain); contains Pfam domain PF01486: K-box region
Length = 240
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +1
Query: 328 EGLENVKRRVQQAMRGKPKKKQLLSINDKALLNKPAN 438
E L+N++ +++ ++RG KK + I + +LN+ N
Sbjct: 121 EALQNLENQLELSLRGVRMKKDQMLIEEIQVLNREGN 157
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,082,467
Number of Sequences: 28952
Number of extensions: 242417
Number of successful extensions: 565
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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