SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0045
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56550.1 68416.m06288 pentatricopeptide (PPR) repeat-containi...    28   4.1  
At3g06560.1 68416.m00762 poly (A) polymerase family protein simi...    28   4.1  
At4g32850.6 68417.m04675 nucleotidyltransferase family protein c...    28   5.4  
At4g32850.5 68417.m04674 nucleotidyltransferase family protein c...    28   5.4  
At4g32850.4 68417.m04671 nucleotidyltransferase family protein c...    28   5.4  
At4g32850.3 68417.m04673 nucleotidyltransferase family protein c...    28   5.4  
At4g32850.2 68417.m04672 nucleotidyltransferase family protein c...    28   5.4  
At4g32850.1 68417.m04676 nucleotidyltransferase family protein c...    28   5.4  
At2g25850.2 68415.m03104 nucleotidyltransferase family protein c...    28   5.4  
At2g25850.1 68415.m03103 nucleotidyltransferase family protein c...    28   5.4  
At3g62820.1 68416.m07058 invertase/pectin methylesterase inhibit...    27   7.2  

>At3g56550.1 68416.m06288 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 581

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = +2

Query: 335 RLKPRLWRGCNVADRIAKVHVDEFLDSDDSSKEVFQSLLDYGVAFITG 478
           R+  R+ +GCN   ++ K+H    ++       +F  LL +    +TG
Sbjct: 6   RVIVRMLQGCNSMKKLRKIHSHVIINGLQHHPSIFNHLLRFCAVSVTG 53


>At3g06560.1 68416.m00762 poly (A) polymerase family protein similar
           to SP|Q9BWT3 Poly(A) polymerase gamma (EC 2.7.7.19) (PAP
           gamma) (Polynucleotide adenylyltransferase gamma) (SRP
           RNA 3' adenylating enzyme) {Homo sapiens}; contains Pfam
           profiles PF04926: Poly(A) polymerase predicted RNA
           binding domain, PF04928: Poly(A) polymerase central
           domain
          Length = 483

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +1

Query: 421 QFKGSISIAS*LWRCLYNWCATKRGSYRNMCKALGGIQHTIFGA 552
           Q   S+ +   L RC+  W A +RG Y N+   LGG+   I  A
Sbjct: 168 QLVPSLELFQSLLRCVKLW-AKRRGVYGNLNGFLGGVHMAILAA 210


>At4g32850.6 68417.m04675 nucleotidyltransferase family protein
           contains Pfam profiles: PF01909 nucleotidyltransferase
           domain,  PF04926 poly(A) polymerase predicted RNA
           binding domain
          Length = 745

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 460 RCLYNWCATKRGSYRNMCKALGGIQHTIFGA 552
           RCL  W A KRG Y N+   LGG+   +  A
Sbjct: 227 RCLKYW-AKKRGVYSNVTGFLGGVNWALLVA 256


>At4g32850.5 68417.m04674 nucleotidyltransferase family protein
           contains Pfam profiles: PF01909 nucleotidyltransferase
           domain,  PF04926 poly(A) polymerase predicted RNA
           binding domain
          Length = 745

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 460 RCLYNWCATKRGSYRNMCKALGGIQHTIFGA 552
           RCL  W A KRG Y N+   LGG+   +  A
Sbjct: 227 RCLKYW-AKKRGVYSNVTGFLGGVNWALLVA 256


>At4g32850.4 68417.m04671 nucleotidyltransferase family protein
           contains Pfam profiles: PF01909 nucleotidyltransferase
           domain,  PF04926 poly(A) polymerase predicted RNA
           binding domain
          Length = 730

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 460 RCLYNWCATKRGSYRNMCKALGGIQHTIFGA 552
           RCL  W A KRG Y N+   LGG+   +  A
Sbjct: 227 RCLKYW-AKKRGVYSNVTGFLGGVNWALLVA 256


>At4g32850.3 68417.m04673 nucleotidyltransferase family protein
           contains Pfam profiles: PF01909 nucleotidyltransferase
           domain,  PF04926 poly(A) polymerase predicted RNA
           binding domain
          Length = 735

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 460 RCLYNWCATKRGSYRNMCKALGGIQHTIFGA 552
           RCL  W A KRG Y N+   LGG+   +  A
Sbjct: 227 RCLKYW-AKKRGVYSNVTGFLGGVNWALLVA 256


>At4g32850.2 68417.m04672 nucleotidyltransferase family protein
           contains Pfam profiles: PF01909 nucleotidyltransferase
           domain,  PF04926 poly(A) polymerase predicted RNA
           binding domain
          Length = 738

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 460 RCLYNWCATKRGSYRNMCKALGGIQHTIFGA 552
           RCL  W A KRG Y N+   LGG+   +  A
Sbjct: 227 RCLKYW-AKKRGVYSNVTGFLGGVNWALLVA 256


>At4g32850.1 68417.m04676 nucleotidyltransferase family protein
           contains Pfam profiles: PF01909 nucleotidyltransferase
           domain,  PF04926 poly(A) polymerase predicted RNA
           binding domain
          Length = 741

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 460 RCLYNWCATKRGSYRNMCKALGGIQHTIFGA 552
           RCL  W A KRG Y N+   LGG+   +  A
Sbjct: 227 RCLKYW-AKKRGVYSNVTGFLGGVNWALLVA 256


>At2g25850.2 68415.m03104 nucleotidyltransferase family protein
           contains Pfam profiles: PF01909 nucleotidyltransferase
           domain,  PF04926 poly(A) polymerase predicted RNA
           binding domain; identical to cDNA GI:31747890
          Length = 800

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 460 RCLYNWCATKRGSYRNMCKALGGIQHTIFGA 552
           RCL  W A KRG Y N+   LGG+   +  A
Sbjct: 229 RCLKYW-AKKRGVYSNVTGFLGGVNWALLVA 258


>At2g25850.1 68415.m03103 nucleotidyltransferase family protein
           contains Pfam profiles: PF01909 nucleotidyltransferase
           domain,  PF04926 poly(A) polymerase predicted RNA
           binding domain; identical to cDNA GI:31747890
          Length = 787

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 460 RCLYNWCATKRGSYRNMCKALGGIQHTIFGA 552
           RCL  W A KRG Y N+   LGG+   +  A
Sbjct: 229 RCLKYW-AKKRGVYSNVTGFLGGVNWALLVA 258


>At3g62820.1 68416.m07058 invertase/pectin methylesterase
          inhibitor family protein low similarity to
          pectinesterase from Arabidopsis thaliana SP|Q43867,
          Lycopersicon esculentum SP|Q43143; contains Pfam
          profile PF04043: Plant invertase/pectin methylesterase
          inhibitor
          Length = 194

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -3

Query: 80 TVLSTKMTFSIFFALFSLNPT 18
          T +S+ +TF++ F L SLNPT
Sbjct: 3  TPMSSSITFALVFFLLSLNPT 23


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,055,394
Number of Sequences: 28952
Number of extensions: 233513
Number of successful extensions: 605
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -