Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0040
         (498 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34820.1 68417.m04941 expressed protein                             31   0.43 
At2g06200.1 68415.m00682 expressed protein                             28   3.0  
At2g26660.1 68415.m03198 SPX (SYG1/Pho81/XPR1) domain-containing...    27   5.3  
At5g64660.1 68418.m08126 U-box domain-containing protein similar...    27   7.0  
At5g63420.1 68418.m07962 metallo-beta-lactamase family protein         27   7.0  
At2g40300.1 68415.m04964 ferritin, putative similar to ferritin ...    27   7.0  
At3g52100.1 68416.m05717 PHD finger family protein contains Pfam...    27   9.3  
At2g31960.1 68415.m03905 glycosyl transferase family 48 protein ...    27   9.3  

>At4g34820.1 68417.m04941 expressed protein 
          Length = 321

 Score = 31.1 bits (67), Expect = 0.43
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = -2

Query: 371 TXKGDKGSXXTVEVGHEIGALAKALDTQKQLAERIFFIHGKSLK 240
           T +G+K    T  VG EIGAL + LD      +    I+G SLK
Sbjct: 233 TPEGEKTIDLTGRVGQEIGALLRRLDIPYHRKDSRLRINGVSLK 276


>At2g06200.1 68415.m00682 expressed protein
          Length = 244

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 397 PPLLVTCFMRPMVFSHESSDNFLKSFANPSL 489
           PP L+    RP +FS  SS +   SF +P+L
Sbjct: 32  PPHLLFLIKRPFLFSSSSSSSSSSSFFSPTL 62


>At2g26660.1 68415.m03198 SPX (SYG1/Pho81/XPR1) domain-containing
           protein low similarity to NUC-2 [Neurospora crassa]
           GI:1399532, xenotropic and polytropic murine leukemia
           virus receptor [Mus musculus castaneus] GI:6093320;
           contains Pfam profile PF03105: SPX domain
          Length = 287

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 458 LSDDSWEKTIGLIKHVTK 405
           L DDSW+K +G+++ V K
Sbjct: 270 LEDDSWKKKVGVLEQVAK 287


>At5g64660.1 68418.m08126 U-box domain-containing protein similar to
           immediate-early fungal elicitor protein CMPG1
           [Petroselinum crispum] GI:14582200; contains Pfam
           profile PF04564: U-box domain
          Length = 420

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = -1

Query: 222 DAEITQYIEEEFVSQQADTIRSLAGHTSDXKRF--ITENNGKD-LSLAVYLF 76
           D E T   +   V +    + ++    SD +RF  +   NG+D LS+ VYLF
Sbjct: 154 DFETTSAAKSLVVQEAVKILSTIRSKVSDRRRFSNLILTNGRDRLSVIVYLF 205


>At5g63420.1 68418.m07962 metallo-beta-lactamase family protein 
          Length = 911

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +1

Query: 427 PMVFSHESSDNFLKSFANPS 486
           P+  S E SD+F KSF NPS
Sbjct: 749 PVGSSSEESDDFWKSFINPS 768


>At2g40300.1 68415.m04964 ferritin, putative similar to ferritin
           subunit cowpea2 precursor [Vigna unguiculata]
           GI:2970654; contains Pfam profile PF00210: Ferritin-like
           domain
          Length = 259

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 8/33 (24%), Positives = 21/33 (63%)
 Frame = -1

Query: 225 HDAEITQYIEEEFVSQQADTIRSLAGHTSDXKR 127
           +D  +  +IE EF+++Q + I+ ++ + +  +R
Sbjct: 210 NDVHLADFIESEFLTEQVEAIKLISEYVAQLRR 242


>At3g52100.1 68416.m05717 PHD finger family protein contains Pfam
           profile PF00628: PHD-finger
          Length = 696

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -2

Query: 455 SDDSWEKTIGLIKHVTKRGGKMDFSSHTTXKGDKGSXXTVEVGHE 321
           SDDSWEK  G++  V   GG    +S      + G   TVE+G +
Sbjct: 644 SDDSWEK--GVVSEVGGAGG----TSKLMVTLENGKVKTVELGKQ 682


>At2g31960.1 68415.m03905 glycosyl transferase family 48 protein
            contains Pfam profile: PF02364 1,3-beta-glucan synthase;
            contains non-consensus splice aite AC at exon 33
          Length = 1959

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 491  NREGFAKLFRKLSDDSWEKTIGLIKHVTKRG 399
            NR G      K  +  WEK IG ++H  KRG
Sbjct: 1735 NRGGIGVPPEKSWESWWEKEIGHLRHSGKRG 1765


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,563,688
Number of Sequences: 28952
Number of extensions: 168286
Number of successful extensions: 476
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)