Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0063.Seq
         (808 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02110.1 68418.m00132 cyclin family protein low similarity to...    28   6.3  
At2g18760.1 68415.m02184 SNF2 domain-containing protein / helica...    28   8.4  

>At5g02110.1 68418.m00132 cyclin family protein low similarity to
           cyclin D3.1 from [Lycopersicon esculentum] GI:5679622,
           [Nicotiana tabacum] GI:4160300; contains Pfam profiles
           PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
           C-terminal domain
          Length = 341

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 258 FNVYRVKKKKKTRGGARYPIRPIVSRITIHWPSF 359
           F ++R +KKK+ RG  +  IRP   R+TI   ++
Sbjct: 308 FQIFRYEKKKRDRGNHQDNIRP-AKRMTIEMSNY 340


>At2g18760.1 68415.m02184 SNF2 domain-containing protein / helicase
           domain-containing protein similar to SP|Q03468 Excision
           repair protein ERCC-6 (Cockayne syndrome protein CSB)
           {Homo sapiens}; contains PFam profiles PF00271: Helicase
           conserved C-terminal domain, PF00176: SNF2 family
           N-terminal domain
          Length = 1187

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +3

Query: 321 PIVSRITIHWPSFYNVVTGKTLALPNLIALQHIPLSPAGVIAKRPAPIALPNSCA 485
           PI +++T  W  F  V  GK   LP   A   +P++  G     P  ++    CA
Sbjct: 576 PIQNKLTELWSLFDFVFPGKLGVLPVFEAEFSVPITVGGYANASPLQVSTAYRCA 630


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,438,072
Number of Sequences: 28952
Number of extensions: 307140
Number of successful extensions: 579
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)