Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0059.Seq
         (895 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil...    30   2.4  
At4g36750.1 68417.m05214 quinone reductase family protein simila...    29   5.5  
At5g25170.1 68418.m02984 expressed protein                             28   7.3  
At2g20800.1 68415.m02446 pyridine nucleotide-disulphide oxidored...    28   7.3  
At2g03060.1 68415.m00259 MADS-box family protein                       28   7.3  
At5g39310.1 68418.m04760 expansin, putative (EXP24) similar to e...    28   9.6  

>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
            protein / CHD family protein similar to chromatin
            remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
            GI:6478518; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain, PF00628: PHD-finger, PF00385: 'chromo'
            (CHRromatin Organization MOdifier)
          Length = 2228

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
 Frame = -3

Query: 287  ETTARN-TGGSCTQDRETTDTKISMPRPQRQRAINFAREWQQDPSAKLPPDNISIHPSHS 111
            E++ RN +     Q+R  T        PQ    +      Q+ P  KL P NI   P   
Sbjct: 1489 ESSRRNYSRPGSRQNRPITGPHFPFNLPQTSNLVEREANDQEPPMGKLKPQNIKEEPFQQ 1548

Query: 110  TVAHLT*AFPT*QAPP 63
             ++++    P  Q PP
Sbjct: 1549 PLSNMDGWLPHRQFPP 1564


>At4g36750.1 68417.m05214 quinone reductase family protein similar
           to 1,4-benzoquinone reductase [Phanerochaete
           chrysosporium][GI:4454993]; similar to Trp repressor
           binding protein [Escherichia coli][SP|P30849]; contains
           flavodoxin domain PF00258
          Length = 273

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/24 (58%), Positives = 15/24 (62%)
 Frame = -3

Query: 284 TTARNTGGSCTQDRETTDTKISMP 213
           TTA NTGG+ T    TT  KIS P
Sbjct: 49  TTATNTGGTTTPAITTTAAKISSP 72


>At5g25170.1 68418.m02984 expressed protein
          Length = 218

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/66 (21%), Positives = 29/66 (43%)
 Frame = -3

Query: 338 ICTGISRSVIPSCRWMRETTARNTGGSCTQDRETTDTKISMPRPQRQRAINFAREWQQDP 159
           +C  ++R  IPS  W+          +C    E  +TK+   R + ++     ++  +  
Sbjct: 124 VCVQLTRRSIPS--WVNRLARFGLFCNCVLPAELNETKVRQVRSKEEKIPEVEKKKLRSR 181

Query: 158 SAKLPP 141
           S++ PP
Sbjct: 182 SSRFPP 187


>At2g20800.1 68415.m02446 pyridine nucleotide-disulphide
           oxidoreductase family protein similar to GI:3718005
           alternative NADH-dehydrogenase {Yarrowia lipolytica} ;
           contains Pfam profile PF00070: Pyridine
           nucleotide-disulphide oxidoreductase
          Length = 582

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 531 LPEGWINIAECWQWLSFSPWFLLVVWRLNAWRT 629
           LP  W++I    QWL    W+ +   +L +WRT
Sbjct: 533 LPGDWVSIGHSSQWL----WYSVYASKLVSWRT 561


>At2g03060.1 68415.m00259 MADS-box family protein 
          Length = 337

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -2

Query: 324 KQKCDSQLQMDEGNNCTQYRRQLHSGQGNH 235
           KQ   SQ Q    NN T Y   LH+   +H
Sbjct: 226 KQDTSSQQQFTNNNNITAYNPNLHNDMNHH 255


>At5g39310.1 68418.m04760 expansin, putative (EXP24) similar to
           expansin - Prunus armeniaca, EMBL:U93167; alpha-expansin
           gene family, PMID:11641069
          Length = 296

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/54 (29%), Positives = 21/54 (38%)
 Frame = -1

Query: 649 ATHIAGNVRQAFNRHTTSKNHGENDSHCQHSAMLIHPSGKLFNPQKSKPKTGRQ 488
           A+H+ G    A   H     HG + SH  H +   HPS        + P  G Q
Sbjct: 15  ASHVPGGRPGAHPSHGAHPAHGAHPSHGAHPSHGAHPSHGAHPSHGALPSHGGQ 68


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,558,604
Number of Sequences: 28952
Number of extensions: 498610
Number of successful extensions: 1209
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1207
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2100696768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)